Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 182678934

GI number: 182678934

Start: 2243000

End: 2243581

Strand: Reverse

Name: pdtaR [H]

Synonym: Bind_1968

Alternate gene names: 182678934

Gene position: 2243581-2243000 (Counterclockwise)

Preceding gene: 182678935

Following gene: 182678933

Centisome position: 53.8

GC content: 58.42

Gene sequence:

>582_bases
ATGAGGATTCTGCTGGCGGATGAAAACCGTGGCCGCGCGCGTGCCTTGTCGGATATTTTCGCGGGTGATCCGTCTCTTGA
ATTGGTGCGGCTCGTTCCTGGACAATCCCTGATCGATGCCGTTTCCCTCCATGGTCCAGATGTCGTTCTGGTCGATATTT
CACGGCCTGATCGTGATGCACTCGATAGTGTGCGCGCTCTGGCCGTGTCCGGCTCAAGGCGTCCGGTCGTGCTCTTCGTC
GATGAGGATGATACGGATTTGATGGAGGCTGCCTTTGAGGCAGGTGTATGCTCTTATAATGTCGTAGATACGCCTCCGAA
GGATGTGAAGCCGCTGCTGCGGGCGGCGATCGCGCTTTATGATCGTTTCCGCCGCACGGAGGATGAATTGCGCGTGGCGC
AGCAACAGCTCTCGGATCGTGCGACGGTCGATCGTGCGAAGGCGGTCTTGATGCGGACGAACCGGATGAGCGAGCCCGAG
GCCTATCGCTGGCTGCGGCGGCGGGCCATGGATCAGGCGAGGAAATTGGCCGACGTGGCGGAAGATTATCTTCGTACAAG
TTCAGAAGGTCACGAAGGATGA

Upstream 100 bases:

>100_bases
TGGCGCGGCATGGCAATATGGCCGATGAACGCGCGGATGATTATATATCGAAACTCTCCCAAGCTGGGCGTTATCGGCGT
GATGTCTATTGAGGCGCGGA

Downstream 100 bases:

>100_bases
GCGGACTTCCCATTCGTATCGGACTGTTGCGTCTGGCTGATAGCGCGCCGGTCCTCGTGGCGCACCGCTTCGGGCTTTTT
CAGGCGGCTGGGATCGAAGC

Product: response regulator receiver/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRILLADENRGRARALSDIFAGDPSLELVRLVPGQSLIDAVSLHGPDVVLVDISRPDRDALDSVRALAVSGSRRPVVLFV
DEDDTDLMEAAFEAGVCSYNVVDTPPKDVKPLLRAAIALYDRFRRTEDELRVAQQQLSDRATVDRAKAVLMRTNRMSEPE
AYRWLRRRAMDQARKLADVAEDYLRTSSEGHEG

Sequences:

>Translated_193_residues
MRILLADENRGRARALSDIFAGDPSLELVRLVPGQSLIDAVSLHGPDVVLVDISRPDRDALDSVRALAVSGSRRPVVLFV
DEDDTDLMEAAFEAGVCSYNVVDTPPKDVKPLLRAAIALYDRFRRTEDELRVAQQQLSDRATVDRAKAVLMRTNRMSEPE
AYRWLRRRAMDQARKLADVAEDYLRTSSEGHEG
>Mature_193_residues
MRILLADENRGRARALSDIFAGDPSLELVRLVPGQSLIDAVSLHGPDVVLVDISRPDRDALDSVRALAVSGSRRPVVLFV
DEDDTDLMEAAFEAGVCSYNVVDTPPKDVKPLLRAAIALYDRFRRTEDELRVAQQQLSDRATVDRAKAVLMRTNRMSEPE
AYRWLRRRAMDQARKLADVAEDYLRTSSEGHEG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21604; Mature: 21604

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLADENRGRARALSDIFAGDPSLELVRLVPGQSLIDAVSLHGPDVVLVDISRPDRDA
CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCCCCHHH
LDSVRALAVSGSRRPVVLFVDEDDTDLMEAAFEAGVCSYNVVDTPPKDVKPLLRAAIALY
HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
DRFRRTEDELRVAQQQLSDRATVDRAKAVLMRTNRMSEPEAYRWLRRRAMDQARKLADVA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
EDYLRTSSEGHEG
HHHHHCCCCCCCC
>Mature Secondary Structure
MRILLADENRGRARALSDIFAGDPSLELVRLVPGQSLIDAVSLHGPDVVLVDISRPDRDA
CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCCCCHHH
LDSVRALAVSGSRRPVVLFVDEDDTDLMEAAFEAGVCSYNVVDTPPKDVKPLLRAAIALY
HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
DRFRRTEDELRVAQQQLSDRATVDRAKAVLMRTNRMSEPEAYRWLRRRAMDQARKLADVA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
EDYLRTSSEGHEG
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]