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The map label for this gene is yqgF [C]

Identifier: 182678862

GI number: 182678862

Start: 2160130

End: 2160627

Strand: Reverse

Name: yqgF [C]

Synonym: Bind_1895

Alternate gene names: 182678862

Gene position: 2160627-2160130 (Counterclockwise)

Preceding gene: 182678864

Following gene: 182678861

Centisome position: 51.81

GC content: 60.84

Gene sequence:

>498_bases
ATGGCGACAAAGGTTCTGCCCCTGGTCGAACTGAAACCCTTGCTTGGTCCGCGTCAACGTCTGATCGGCATTGATCTCGG
GACCAAAACCATCGGTCTTTCTCTGTCTGATGTGGAGCGTCGGATCGCGACTCCGCTCGAGACGATTCGCCGGACCAAAT
TCACCAAGGATGCGGAGCGTCTCCTCGCCTTGGCTGACCAATTCGATGTCGCCGCTTTTGTGATCGGCTTGCCACTCAAC
ATGGATGGTTCAGCGGGGCCGAGGGTCCAGGCGACGGAGGCTTTCGTGCGCAGCCTTTCGGGGCTGACGAGCCGGCCCTT
TTGCTATTGGGATGAAAGGCTTTCGACAGCCGCGGTCACGCGTGATCTCATCGCGCAGGACGCCTCGCGCGCCAAGCGGG
CCGCCGTCGTTGACAAGCTCGCCGCGGCTTTCATCCTGCAAGGCGCGCTCGACCGCTTGGCCTGGGTCCATGAAACCGCG
GACAAGGATTTACCTTGA

Upstream 100 bases:

>100_bases
GGAAATATTTTCTTTGCACGGGCCGGTTTGAGCGTCCATACGCCAAGGTAAGATGCATTTGTTATTCGCTGGAGCATAAC
CTGCGGGAGGCCAAAATCCT

Downstream 100 bases:

>100_bases
ACCTGGGCTTCAACCCGTTGACAGGAAGGGACGGAAAACTTAATAACGCCACGATCCACCGCCGTCGAGATGAAGCGCCT
TATGCGCCGCTTGATGGGGT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MATKVLPLVELKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLALADQFDVAAFVIGLPLN
MDGSAGPRVQATEAFVRSLSGLTSRPFCYWDERLSTAAVTRDLIAQDASRAKRAAVVDKLAAAFILQGALDRLAWVHETA
DKDLP

Sequences:

>Translated_165_residues
MATKVLPLVELKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLALADQFDVAAFVIGLPLN
MDGSAGPRVQATEAFVRSLSGLTSRPFCYWDERLSTAAVTRDLIAQDASRAKRAAVVDKLAAAFILQGALDRLAWVHETA
DKDLP
>Mature_164_residues
ATKVLPLVELKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAERLLALADQFDVAAFVIGLPLNM
DGSAGPRVQATEAFVRSLSGLTSRPFCYWDERLSTAAVTRDLIAQDASRAKRAAVVDKLAAAFILQGALDRLAWVHETAD
KDLP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=132, Percent_Identity=30.3030303030303, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BEII9 (B2IEC1)

Other databases:

- EMBL:   CP001016
- RefSeq:   YP_001833008.1
- GeneID:   6201539
- GenomeReviews:   CP001016_GR
- KEGG:   bid:Bind_1895
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 18009; Mature: 17878

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKVLPLVELKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAER
CCCCCCHHHHHHHCCCCHHHEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHH
LLALADQFDVAAFVIGLPLNMDGSAGPRVQATEAFVRSLSGLTSRPFCYWDERLSTAAVT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
RDLIAQDASRAKRAAVVDKLAAAFILQGALDRLAWVHETADKDLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATKVLPLVELKPLLGPRQRLIGIDLGTKTIGLSLSDVERRIATPLETIRRTKFTKDAER
CCCCCHHHHHHHCCCCHHHEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHH
LLALADQFDVAAFVIGLPLNMDGSAGPRVQATEAFVRSLSGLTSRPFCYWDERLSTAAVT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
RDLIAQDASRAKRAAVVDKLAAAFILQGALDRLAWVHETADKDLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA