Click here to switch to the map view.

The map label for this gene is rutD [H]

Identifier: 182678864

GI number: 182678864

Start: 2162193

End: 2162987

Strand: Reverse

Name: rutD [H]

Synonym: Bind_1897

Alternate gene names: 182678864

Gene position: 2162987-2162193 (Counterclockwise)

Preceding gene: 182678869

Following gene: 182678862

Centisome position: 51.87

GC content: 61.01

Gene sequence:

>795_bases
ATGCAGCTTTCTTTGTCCGACGGCACCGTGCTCCACTACGATATTATGGGGCAAGGTGAGACGACCTTGGTTCTCATCAA
CGGCCTTGGCCTCAAGGGAACCGTCTGGCGGCCCTTGGCAGCGTCCCTCAAAAATCGCTTTCAGGTGGTGATGGTCGATA
ATCGCGGGATCGGCCTGACCGAATCCGCCGGTCCCTTTACGACGCGGGATATGGCTGGCGATATCGCCGCCTTGATCGCC
GAGGTCTCGCCAAACGGCCGGGCGCATGTGCTTGGTTTTTCCATGGGGGGCTTCGTCGCCCAGCATCTCGCTGTTGCTCA
TCCCGACCGCGTCGATAAATTGATCCTGGTCTCGACTGCGATCAGTCTCTCCGCGCGGTCCTCGGCGGTCATCGCGCATT
GGTGTGCGATGACCAGGGCCAAAGTCGATCCAGCGCTGATCCTGCGCGATAAATTTCTGTTCGTTTGGGAAGACCGGTTC
TTCGACAGGGAGGAAAGCATCACAGCCCTGATCAAGATCATTCTGAGCGATGCTTCGCCGCAAAGCACGGAAGATTTTTG
CCGACAGGTCGCGGCCTGCCACGGCCATGCCGATGAGGGGCTGCCCGCCCGCATCCGCGCCGAGACGCTGGTGGTCACCG
GCCCACAGGAACGTTTGCTGTCGGTCGATGACGCGCGGCAATTGGCGGCGGCCATCCCCGGCGCGCGCTTCGAACTTCTG
CCGGGAGGAGCCCATAACGCCTGGGTCGAACGCCTTGGCGAGATGACGGAACTGGTCGAGGCTTTTCTGGCCTAA

Upstream 100 bases:

>100_bases
CCACAAAAAATAGCGCAGCGCTTCCCGCAATGGTGGTGGCGATCTCACATCGATCGCGAAACTCTCCGGTTTCCAGTCAA
ATCAAGGCGCTCTCCTTCCC

Downstream 100 bases:

>100_bases
ACCCCGCCTCACAACGAGGGTTGTTTTATGATTGGGTTCAAGCCGGGCATGCCCACACGTTATTGTTCTGGTGGATAAAA
TCTGACGTTTGAGTCTCAAG

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MQLSLSDGTVLHYDIMGQGETTLVLINGLGLKGTVWRPLAASLKNRFQVVMVDNRGIGLTESAGPFTTRDMAGDIAALIA
EVSPNGRAHVLGFSMGGFVAQHLAVAHPDRVDKLILVSTAISLSARSSAVIAHWCAMTRAKVDPALILRDKFLFVWEDRF
FDREESITALIKIILSDASPQSTEDFCRQVAACHGHADEGLPARIRAETLVVTGPQERLLSVDDARQLAAAIPGARFELL
PGGAHNAWVERLGEMTELVEAFLA

Sequences:

>Translated_264_residues
MQLSLSDGTVLHYDIMGQGETTLVLINGLGLKGTVWRPLAASLKNRFQVVMVDNRGIGLTESAGPFTTRDMAGDIAALIA
EVSPNGRAHVLGFSMGGFVAQHLAVAHPDRVDKLILVSTAISLSARSSAVIAHWCAMTRAKVDPALILRDKFLFVWEDRF
FDREESITALIKIILSDASPQSTEDFCRQVAACHGHADEGLPARIRAETLVVTGPQERLLSVDDARQLAAAIPGARFELL
PGGAHNAWVERLGEMTELVEAFLA
>Mature_264_residues
MQLSLSDGTVLHYDIMGQGETTLVLINGLGLKGTVWRPLAASLKNRFQVVMVDNRGIGLTESAGPFTTRDMAGDIAALIA
EVSPNGRAHVLGFSMGGFVAQHLAVAHPDRVDKLILVSTAISLSARSSAVIAHWCAMTRAKVDPALILRDKFLFVWEDRF
FDREESITALIKIILSDASPQSTEDFCRQVAACHGHADEGLPARIRAETLVVTGPQERLLSVDDARQLAAAIPGARFELL
PGGAHNAWVERLGEMTELVEAFLA

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

Organism=Escherichia coli, GI1789817, Length=114, Percent_Identity=35.9649122807018, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081721, Length=275, Percent_Identity=24.3636363636364, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 28506; Mature: 28506

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSLSDGTVLHYDIMGQGETTLVLINGLGLKGTVWRPLAASLKNRFQVVMVDNRGIGLT
CEEECCCCEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCC
ESAGPFTTRDMAGDIAALIAEVSPNGRAHVLGFSMGGFVAQHLAVAHPDRVDKLILVSTA
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCCHHCEEEEEEEH
ISLSARSSAVIAHWCAMTRAKVDPALILRDKFLFVWEDRFFDREESITALIKIILSDASP
HHHCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
QSTEDFCRQVAACHGHADEGLPARIRAETLVVTGPQERLLSVDDARQLAAAIPGARFELL
CCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCHHHHCCHHHHHHHHHHCCCCEEEEE
PGGAHNAWVERLGEMTELVEAFLA
CCCCHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MQLSLSDGTVLHYDIMGQGETTLVLINGLGLKGTVWRPLAASLKNRFQVVMVDNRGIGLT
CEEECCCCEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCC
ESAGPFTTRDMAGDIAALIAEVSPNGRAHVLGFSMGGFVAQHLAVAHPDRVDKLILVSTA
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCCHHCEEEEEEEH
ISLSARSSAVIAHWCAMTRAKVDPALILRDKFLFVWEDRFFDREESITALIKIILSDASP
HHHCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
QSTEDFCRQVAACHGHADEGLPARIRAETLVVTGPQERLLSVDDARQLAAAIPGARFELL
CCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCHHHHCCHHHHHHHHHHCCCCEEEEE
PGGAHNAWVERLGEMTELVEAFLA
CCCCHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA