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The map label for this gene is soxC [H]

Identifier: 182678820

GI number: 182678820

Start: 2110989

End: 2112239

Strand: Direct

Name: soxC [H]

Synonym: Bind_1853

Alternate gene names: 182678820

Gene position: 2110989-2112239 (Clockwise)

Preceding gene: 182678819

Following gene: 182678821

Centisome position: 50.62

GC content: 57.23

Gene sequence:

>1251_bases
ATGTCCACGCCAGCCGCAGTCCTTCCCCTTTCCCGTGAAAAGGAAACCGTCCAGCCGAAACGGGAAGAGATTTTGAGCCG
GCTGCCGGCCATCGCCGCTGAAATCGCCGAGGATGCTGCGCGGCGTGAACGTGAACGCGAATTGCCCCATGATATCTTTC
GCAAATTGCGGGAGACGGGCCTGACCTCTCTCCGCGTGCCAGAGGCATTGGGCGGCCCAGGTGGCACGATGAGCGATCAG
GTTGAAATCATTTGCGCTTTGGCCGCCGCCGACTCGAGCGTGGCGCATGCCTTGCGTACACATTTCAGTTTTGTGGAATC
GATGGCGATCGATCCACAATCATTTCTCAGCACGCGCTATGCCGGAGAAGTGCTGAAGGGCAAACTGTTCGGCGGCGCCT
ATATGGAAGTCGGCACGCCGCGTCCCAATACGATCCGCGCCACCATAAGGCGGAATGGCGACCATTATCTTCTCAATGGC
AATAAATATTATGCGACGGGCACCGCTTATGCCGATTATACGAGTTTCACCGCCCTGGATGAGGAAGGCACCGTCATCAA
TGCCTTGATCCCAGCGGATCGTGAAGGCGTACACATCCTCGATGATTGGGACGGCATGGGACAGCGGATGTCGGCCAGCG
GTGGTGTTTCGCTCGTCAATGTCACGGTCTATCCGGATGAGACCTCTCCGCACATCAAAGCCAATCCTTTCGTGCGCCGC
CATGGAGCCACAAGGGCGCAATTGCATCTGGCAGCGGTCATTGTCGGCATTGTACGTAACGTCGTGAGCGATGCGATTCA
CTATGTGCAAGCCAGCGCGCGTTCCGCCAAACATAGTGCCTCGGAAACCGCGCGCGGCGATCATTTCGTGCAAAGAGCGG
TTGGTGAAATATCCGCCATCTCCTATGCTCTCGATGCCCTGATCGCCGAGACCGCGCGGAAACTGGATCGCGCTGCGGAG
GCGATCGTTGCTGGAACGCCGGACGCAGAACTTGATGATCTCGTCATGGCCAGCGCTCTCGCCAATTCCAAGACACAGAT
TGTCACCGGCACTTTGGCCAGTCGCGCCGCCGAATTGATCTTTGAAACCGGGGGTGGCTCGGCGACATCGAGAACCAATA
ATTTCGATCGTCACTGGCGGAATATCCGCACGCTGCTCAATCACAATCCGCTTTTTCTCAAGGCGCGTGTCGTGGGCGAT
TATTATCTCAACGGCACGAGAACGGATTTCGACGAAGGCCGGATCTTCTGA

Upstream 100 bases:

>100_bases
CATGAGTTTGTGATCATTTTTCAGATTTGAAGAGTGCTGTCTGCGCATTCATGGATCGGCCAGCACTCAGGTCTTTTTTG
ACGAGGATAGAGAGAGAGAC

Downstream 100 bases:

>100_bases
GACGAAACGTCCATGCCAAAGGCGCGAGCGGCCTCGTGCCTGAAATTGCTTTTAGTTTATGGATTTAATAACACGACCGA
AGGAAGAGGATCATGACCGC

Product: acyl-CoA dehydrogenase type 2

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSTPAAVLPLSREKETVQPKREEILSRLPAIAAEIAEDAARRERERELPHDIFRKLRETGLTSLRVPEALGGPGGTMSDQ
VEIICALAAADSSVAHALRTHFSFVESMAIDPQSFLSTRYAGEVLKGKLFGGAYMEVGTPRPNTIRATIRRNGDHYLLNG
NKYYATGTAYADYTSFTALDEEGTVINALIPADREGVHILDDWDGMGQRMSASGGVSLVNVTVYPDETSPHIKANPFVRR
HGATRAQLHLAAVIVGIVRNVVSDAIHYVQASARSAKHSASETARGDHFVQRAVGEISAISYALDALIAETARKLDRAAE
AIVAGTPDAELDDLVMASALANSKTQIVTGTLASRAAELIFETGGGSATSRTNNFDRHWRNIRTLLNHNPLFLKARVVGD
YYLNGTRTDFDEGRIF

Sequences:

>Translated_416_residues
MSTPAAVLPLSREKETVQPKREEILSRLPAIAAEIAEDAARRERERELPHDIFRKLRETGLTSLRVPEALGGPGGTMSDQ
VEIICALAAADSSVAHALRTHFSFVESMAIDPQSFLSTRYAGEVLKGKLFGGAYMEVGTPRPNTIRATIRRNGDHYLLNG
NKYYATGTAYADYTSFTALDEEGTVINALIPADREGVHILDDWDGMGQRMSASGGVSLVNVTVYPDETSPHIKANPFVRR
HGATRAQLHLAAVIVGIVRNVVSDAIHYVQASARSAKHSASETARGDHFVQRAVGEISAISYALDALIAETARKLDRAAE
AIVAGTPDAELDDLVMASALANSKTQIVTGTLASRAAELIFETGGGSATSRTNNFDRHWRNIRTLLNHNPLFLKARVVGD
YYLNGTRTDFDEGRIF
>Mature_415_residues
STPAAVLPLSREKETVQPKREEILSRLPAIAAEIAEDAARRERERELPHDIFRKLRETGLTSLRVPEALGGPGGTMSDQV
EIICALAAADSSVAHALRTHFSFVESMAIDPQSFLSTRYAGEVLKGKLFGGAYMEVGTPRPNTIRATIRRNGDHYLLNGN
KYYATGTAYADYTSFTALDEEGTVINALIPADREGVHILDDWDGMGQRMSASGGVSLVNVTVYPDETSPHIKANPFVRRH
GATRAQLHLAAVIVGIVRNVVSDAIHYVQASARSAKHSASETARGDHFVQRAVGEISAISYALDALIAETARKLDRAAEA
IVAGTPDAELDDLVMASALANSKTQIVTGTLASRAAELIFETGGGSATSRTNNFDRHWRNIRTLLNHNPLFLKARVVGDY
YLNGTRTDFDEGRIF

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 45154; Mature: 45023

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPAAVLPLSREKETVQPKREEILSRLPAIAAEIAEDAARRERERELPHDIFRKLRETG
CCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
LTSLRVPEALGGPGGTMSDQVEIICALAAADSSVAHALRTHFSFVESMAIDPQSFLSTRY
CCEEECCHHHCCCCCCCCCHHHEEEEEHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AGEVLKGKLFGGAYMEVGTPRPNTIRATIRRNGDHYLLNGNKYYATGTAYADYTSFTALD
HHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCEEEECCCEEEEECCCCCCCCCEEEEC
EEGTVINALIPADREGVHILDDWDGMGQRMSASGGVSLVNVTVYPDETSPHIKANPFVRR
CCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHH
HGATRAQLHLAAVIVGIVRNVVSDAIHYVQASARSAKHSASETARGDHFVQRAVGEISAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
SYALDALIAETARKLDRAAEAIVAGTPDAELDDLVMASALANSKTQIVTGTLASRAAELI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
FETGGGSATSRTNNFDRHWRNIRTLLNHNPLFLKARVVGDYYLNGTRTDFDEGRIF
EECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
STPAAVLPLSREKETVQPKREEILSRLPAIAAEIAEDAARRERERELPHDIFRKLRETG
CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
LTSLRVPEALGGPGGTMSDQVEIICALAAADSSVAHALRTHFSFVESMAIDPQSFLSTRY
CCEEECCHHHCCCCCCCCCHHHEEEEEHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AGEVLKGKLFGGAYMEVGTPRPNTIRATIRRNGDHYLLNGNKYYATGTAYADYTSFTALD
HHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCEEEECCCEEEEECCCCCCCCCEEEEC
EEGTVINALIPADREGVHILDDWDGMGQRMSASGGVSLVNVTVYPDETSPHIKANPFVRR
CCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHH
HGATRAQLHLAAVIVGIVRNVVSDAIHYVQASARSAKHSASETARGDHFVQRAVGEISAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
SYALDALIAETARKLDRAAEAIVAGTPDAELDDLVMASALANSKTQIVTGTLASRAAELI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
FETGGGSATSRTNNFDRHWRNIRTLLNHNPLFLKARVVGDYYLNGTRTDFDEGRIF
EECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]