| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is yusZ [H]
Identifier: 182678795
GI number: 182678795
Start: 2075228
End: 2076064
Strand: Reverse
Name: yusZ [H]
Synonym: Bind_1825
Alternate gene names: 182678795
Gene position: 2076064-2075228 (Counterclockwise)
Preceding gene: 182678796
Following gene: 182678794
Centisome position: 49.78
GC content: 67.38
Gene sequence:
>837_bases ATGTCGAAGACTTGGTTCATCACCGGTGCCAGCAGCGGCTTCGGCCGCGAGCTGACGGCGCTTCTGCTCGAGCGTGGGCA CCGGGTCGCCGCTACGGTCCGCAAGCCGGACGCGCTGCGGGATCTGGCCGCGACCTATGGCGAGCGTCTCTGGGTCGGCG TCCTCGACGTCACGGACGGGGCGGCCGTGCGCAGCGTCATCGACCGCGCCTTCGCCGAGCTGCCACGGATCGACATCGTC GTCAGCAATGCTGGCTATGCGCTGTTCGGCGCGGCGGAAGAGGTTGCCGACGCGCAGATCGAGCGTCAGATCGCAACCAA TCTCACGGGCTCGATCCAGGTTGCCCGGGCGGCGATCCCTCACCTGCGGCGCCAGAACGGTGGGCGGATCATCCAGATCT CGTCGTCGGTCGGCCAGGCGGCCTATCCGACCATGGGGGTCTATGCCGCGACCAAGTGGGGCATTGAGGGCTTCTTCGAA GGCACGATCCCGGAAATCGCCCCGTTCGGCATCGAGGTGACTTTAGTCGAGCCCGGCGCCTCGCGCACGAATTTCGCGGG CTCGAGCGCGGACGCGGGCCAGATCCTGGACGTCTATGACCAGACCCCCGTCGGCGACTTCCGCCGGATTGTGGCCTCCG CCGGCCTCGCGATGTTCCCTGGCGACCCTCACAAAATCGCCTCGGCGATCATTGCCTCGGCGGACCAAAGCCCGGCGCCG AAGCGGCTCACTCTCGGCAGTGATGCCTATGCCCTCGTTCATGCAGCCTTGACGGAGCGCCTGGCGACCCTCGAAGCCCA GAAGGAGCTGGCGCATGCGACGGATGTGGACGCCTGA
Upstream 100 bases:
>100_bases GTCGAGCACACCAACCTGTTCCTCGACCGGGCCGAAATCTGAGCCCGTGAATCGCCGGCGCCGCGCCACGGCGCCCTACC TAACCGAAAGGATTTTCCCC
Downstream 100 bases:
>100_bases CACCGGTCGAACATCCACCAGCCAGGACAATGCAGTTCATGTCGTCGCCGTTAGCAACAGCGGGATCGACATGGACTGGC ATTCTGTTGCGGCTTTAGAC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MSKTWFITGASSGFGRELTALLLERGHRVAATVRKPDALRDLAATYGERLWVGVLDVTDGAAVRSVIDRAFAELPRIDIV VSNAGYALFGAAEEVADAQIERQIATNLTGSIQVARAAIPHLRRQNGGRIIQISSSVGQAAYPTMGVYAATKWGIEGFFE GTIPEIAPFGIEVTLVEPGASRTNFAGSSADAGQILDVYDQTPVGDFRRIVASAGLAMFPGDPHKIASAIIASADQSPAP KRLTLGSDAYALVHAALTERLATLEAQKELAHATDVDA
Sequences:
>Translated_278_residues MSKTWFITGASSGFGRELTALLLERGHRVAATVRKPDALRDLAATYGERLWVGVLDVTDGAAVRSVIDRAFAELPRIDIV VSNAGYALFGAAEEVADAQIERQIATNLTGSIQVARAAIPHLRRQNGGRIIQISSSVGQAAYPTMGVYAATKWGIEGFFE GTIPEIAPFGIEVTLVEPGASRTNFAGSSADAGQILDVYDQTPVGDFRRIVASAGLAMFPGDPHKIASAIIASADQSPAP KRLTLGSDAYALVHAALTERLATLEAQKELAHATDVDA >Mature_277_residues SKTWFITGASSGFGRELTALLLERGHRVAATVRKPDALRDLAATYGERLWVGVLDVTDGAAVRSVIDRAFAELPRIDIVV SNAGYALFGAAEEVADAQIERQIATNLTGSIQVARAAIPHLRRQNGGRIIQISSSVGQAAYPTMGVYAATKWGIEGFFEG TIPEIAPFGIEVTLVEPGASRTNFAGSSADAGQILDVYDQTPVGDFRRIVASAGLAMFPGDPHKIASAIIASADQSPAPK RLTLGSDAYALVHAALTERLATLEAQKELAHATDVDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=232, Percent_Identity=31.4655172413793, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI223718074, Length=221, Percent_Identity=30.316742081448, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=28.6407766990291, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI22507405, Length=206, Percent_Identity=30.5825242718447, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI50726952, Length=181, Percent_Identity=35.3591160220994, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI44680136, Length=186, Percent_Identity=31.1827956989247, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI44680133, Length=186, Percent_Identity=31.1827956989247, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI17738292, Length=186, Percent_Identity=31.1827956989247, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI19743808, Length=207, Percent_Identity=30.9178743961353, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI150247226, Length=206, Percent_Identity=30.5825242718447, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI7706318, Length=198, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI40254992, Length=219, Percent_Identity=26.4840182648402, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI4503817, Length=265, Percent_Identity=26.7924528301887, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI119392083, Length=200, Percent_Identity=28.5, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI40548397, Length=199, Percent_Identity=28.1407035175879, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI214010158, Length=199, Percent_Identity=28.1407035175879, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI214010156, Length=199, Percent_Identity=28.1407035175879, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI22758144, Length=199, Percent_Identity=28.1407035175879, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI4504503, Length=205, Percent_Identity=28.2926829268293, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1787820, Length=204, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1786701, Length=187, Percent_Identity=32.620320855615, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1787335, Length=206, Percent_Identity=32.5242718446602, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=34.0314136125654, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=27.1739130434783, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI2367175, Length=209, Percent_Identity=28.2296650717703, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789208, Length=206, Percent_Identity=27.1844660194175, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71994604, Length=234, Percent_Identity=28.2051282051282, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71997402, Length=210, Percent_Identity=29.0476190476191, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17570069, Length=210, Percent_Identity=27.6190476190476, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17507613, Length=208, Percent_Identity=28.3653846153846, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI32563809, Length=208, Percent_Identity=28.3653846153846, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=26.8421052631579, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17562904, Length=250, Percent_Identity=28.8, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17557780, Length=209, Percent_Identity=25.3588516746411, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17559104, Length=194, Percent_Identity=31.9587628865979, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=28.7179487179487, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI115534660, Length=200, Percent_Identity=27.5, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17562910, Length=246, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562990, Length=247, Percent_Identity=26.7206477732794, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562906, Length=275, Percent_Identity=26.1818181818182, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17551412, Length=250, Percent_Identity=28.4, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17565030, Length=206, Percent_Identity=30.0970873786408, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6323882, Length=216, Percent_Identity=30.5555555555556, Blast_Score=93, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6322067, Length=253, Percent_Identity=24.901185770751, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=27.6041666666667, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI21358495, Length=205, Percent_Identity=27.8048780487805, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357041, Length=182, Percent_Identity=29.6703296703297, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI28571526, Length=187, Percent_Identity=29.9465240641711, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24651139, Length=188, Percent_Identity=30.3191489361702, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=29.7872340425532, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24644339, Length=234, Percent_Identity=27.3504273504274, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007236, Length=194, Percent_Identity=28.8659793814433, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24643142, Length=176, Percent_Identity=28.4090909090909, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI116007238, Length=179, Percent_Identity=29.0502793296089, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21355319, Length=189, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI221331216, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665247, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355631, Length=260, Percent_Identity=24.6153846153846, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=30.1587301587302, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29327; Mature: 29196
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTWFITGASSGFGRELTALLLERGHRVAATVRKPDALRDLAATYGERLWVGVLDVTDG CCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCEEEEEEEECCCC AAVRSVIDRAFAELPRIDIVVSNAGYALFGAAEEVADAQIERQIATNLTGSIQVARAAIP HHHHHHHHHHHHHCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH HLRRQNGGRIIQISSSVGQAAYPTMGVYAATKWGIEGFFEGTIPEIAPFGIEVTLVEPGA HHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCC SRTNFAGSSADAGQILDVYDQTPVGDFRRIVASAGLAMFPGDPHKIASAIIASADQSPAP CCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCEECCCCHHHHHHHHHHCCCCCCCC KRLTLGSDAYALVHAALTERLATLEAQKELAHATDVDA CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SKTWFITGASSGFGRELTALLLERGHRVAATVRKPDALRDLAATYGERLWVGVLDVTDG CCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCEEEEEEEECCCC AAVRSVIDRAFAELPRIDIVVSNAGYALFGAAEEVADAQIERQIATNLTGSIQVARAAIP HHHHHHHHHHHHHCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH HLRRQNGGRIIQISSSVGQAAYPTMGVYAATKWGIEGFFEGTIPEIAPFGIEVTLVEPGA HHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCC SRTNFAGSSADAGQILDVYDQTPVGDFRRIVASAGLAMFPGDPHKIASAIIASADQSPAP CCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCEECCCCHHHHHHHHHHCCCCCCCC KRLTLGSDAYALVHAALTERLATLEAQKELAHATDVDA CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]