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The map label for this gene is sodB [H]

Identifier: 182678620

GI number: 182678620

Start: 1861702

End: 1862301

Strand: Direct

Name: sodB [H]

Synonym: Bind_1646

Alternate gene names: 182678620

Gene position: 1861702-1862301 (Clockwise)

Preceding gene: 182678618

Following gene: 182678624

Centisome position: 44.64

GC content: 55.5

Gene sequence:

>600_bases
ATGTCGCTCACACTTCCCCCCCTGCCTTATGCCTATGATGCGTTGCAACCCTTCATGTCGAAGGAGACGCTCGAGTTCCA
TCACGACAAGCACCATCAGGCTTATGTGACGAACGGCAATAATCTGCTCAAGGATAGCGGCCTCGAAGGCAAGTCCCTCG
AGGATATCGTCAAGGAATCCTTCGGCAAGAATCCTGGCCTCTTCAACAATGCTGGCCAGCATTACAACCACCTGCATTTC
TGGCAGTGGATGAAGCCGAACGGTGGCGGTGCCATTCCCGGCACAGTCGAAAAGGCGATCATCGACAGCTTCGGCTCTGT
CGATAAGGCCAAGGAAGAATTCATTCAGGCTGGCGTGACCCAGTTCGGTTCCGGCTGGTCCTGGCTCGCCGTCAAGGACG
GCAAGATCGTCGTCATGAAGACCCCGAACGGCGAGAACCCGCTCGTTCATGGTGCGACCCCGATCCTCGGTTGCGACGTC
TGGGAACATTCCTACTATATCGACTATCGCAATCGCCGTCCCGACTATCTCAAGGCCTTCGTCGATAGCCTCGTGAACTG
GGAATATGTCGAAGAGCTCTACACCAAGGCTGTCGGCTAA

Upstream 100 bases:

>100_bases
GTTGCCGTACCAAGCGGAGCCGTTTAGTTATAGCTGAGCGGCAGGGCAATGTGCGCATTCTGCTTTCTGCTGCACGCGAT
TCGAAATTCAGGAGCCTTCT

Downstream 100 bases:

>100_bases
TTCCTGATGATGGCAAGGCGTGAAAGTCGCGCCTTGCGCTGATCGAGCAGGCGCAAGAAATCATCCGAGAGAAGGAAAGC
CAGTTCCTTTTCTCGGCTGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSLTLPPLPYAYDALQPFMSKETLEFHHDKHHQAYVTNGNNLLKDSGLEGKSLEDIVKESFGKNPGLFNNAGQHYNHLHF
WQWMKPNGGGAIPGTVEKAIIDSFGSVDKAKEEFIQAGVTQFGSGWSWLAVKDGKIVVMKTPNGENPLVHGATPILGCDV
WEHSYYIDYRNRRPDYLKAFVDSLVNWEYVEELYTKAVG

Sequences:

>Translated_199_residues
MSLTLPPLPYAYDALQPFMSKETLEFHHDKHHQAYVTNGNNLLKDSGLEGKSLEDIVKESFGKNPGLFNNAGQHYNHLHF
WQWMKPNGGGAIPGTVEKAIIDSFGSVDKAKEEFIQAGVTQFGSGWSWLAVKDGKIVVMKTPNGENPLVHGATPILGCDV
WEHSYYIDYRNRRPDYLKAFVDSLVNWEYVEELYTKAVG
>Mature_198_residues
SLTLPPLPYAYDALQPFMSKETLEFHHDKHHQAYVTNGNNLLKDSGLEGKSLEDIVKESFGKNPGLFNNAGQHYNHLHFW
QWMKPNGGGAIPGTVEKAIIDSFGSVDKAKEEFIQAGVTQFGSGWSWLAVKDGKIVVMKTPNGENPLVHGATPILGCDVW
EHSYYIDYRNRRPDYLKAFVDSLVNWEYVEELYTKAVG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=195, Percent_Identity=43.0769230769231, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI67782305, Length=195, Percent_Identity=43.0769230769231, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI67782309, Length=195, Percent_Identity=36.4102564102564, Blast_Score=112, Evalue=2e-25,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=53.3678756476684, Blast_Score=208, Evalue=2e-55,
Organism=Escherichia coli, GI1790342, Length=199, Percent_Identity=45.7286432160804, Blast_Score=169, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=38.5786802030457, Blast_Score=134, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=195, Percent_Identity=36.4102564102564, Blast_Score=127, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6321796, Length=215, Percent_Identity=33.953488372093, Blast_Score=98, Evalue=7e-22,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=39.8989898989899, Blast_Score=132, Evalue=2e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22416; Mature: 22285

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTLPPLPYAYDALQPFMSKETLEFHHDKHHQAYVTNGNNLLKDSGLEGKSLEDIVKES
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCCCCCCHHHHHHHH
FGKNPGLFNNAGQHYNHLHFWQWMKPNGGGAIPGTVEKAIIDSFGSVDKAKEEFIQAGVT
HCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
QFGSGWSWLAVKDGKIVVMKTPNGENPLVHGATPILGCDVWEHSYYIDYRNRRPDYLKAF
HHCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEECEEECCEEEEECCCCCHHHHHHH
VDSLVNWEYVEELYTKAVG
HHHHHCHHHHHHHHHHHCC
>Mature Secondary Structure 
SLTLPPLPYAYDALQPFMSKETLEFHHDKHHQAYVTNGNNLLKDSGLEGKSLEDIVKES
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCCCCCCHHHHHHHH
FGKNPGLFNNAGQHYNHLHFWQWMKPNGGGAIPGTVEKAIIDSFGSVDKAKEEFIQAGVT
HCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
QFGSGWSWLAVKDGKIVVMKTPNGENPLVHGATPILGCDVWEHSYYIDYRNRRPDYLKAF
HHCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEECEEECCEEEEECCCCCHHHHHHH
VDSLVNWEYVEELYTKAVG
HHHHHCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]