Click here to switch to the map view.

The map label for this gene is cspE [C]

Identifier: 182678527

GI number: 182678527

Start: 1753184

End: 1753801

Strand: Reverse

Name: cspE [C]

Synonym: Bind_1552

Alternate gene names: 182678527

Gene position: 1753801-1753184 (Counterclockwise)

Preceding gene: 182678528

Following gene: 182678526

Centisome position: 42.06

GC content: 60.84

Gene sequence:

>618_bases
TTGCCCGACAAGGACCAGACGCAATCCCATGCCGCTTTCGACAATCCCCTCTTGGATGCCCTGGCGGACTCGCCCGAGCC
TGCCCAACTCGTCGAGATTTCCGGGCGGATCAAATGGTTCGACCTCGTCAAGGGCTATGGATTCGTGGTGGCCGATAATG
GTCTCGGCGATGTCTTGTTGCATGTGACGGCTCTACGCAAGGATGGTCATTCCAAGGCGTGTGAGGGCGCGCGTGTCGTT
TGTGAGGCCATGCGGGGGACCAAGGGCTGGCAGGTGTTCCGCGTCATATCCCTCGATGCGCCGGCGCCCGCCGAAAAGCC
GGACCTCTCCGAGGAGCCGCCGCGAAACTTATCCTCACGCGAGGAACCACAAGTCCTGCCCCTTGGCGGTTTCGAGGACG
TCAAGGTCAAATGGTTCAATCGGGTGAAAGGATTCGGCTTTCTTTCGCGCGGTGACGGCACGGAAGATATTTTCGTCCAT
ATGGAGATCCTGCGGCGGCACGGTATCTCCATTTTGCATCCCGGGGAGGAACTGCGCGCCCGTTTCGGTCAGGGCCCCAA
GGGCCTGATCGCGATCGAAGTCAGGCCGCTTGACGCGCCCGCGCCTGTTCATCACTGA

Upstream 100 bases:

>100_bases
AATAGCTGTTCGTCGGATCGATCCTAGCGACTTTGGGCTGATCGAAGGCTGCAGCACAGTCAACGCCACATTATCCAGGC
CGGGACTTTGGGAGGGGGCT

Downstream 100 bases:

>100_bases
CACCAAAGGTCGTAGAGAACGACCTTTGGTTCCTTTCTTGAATTTTCGCTTTTTCAAAGCGATGGCGAAAATTCAAGAGC
GCTCCAACGGACATTTATTA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator Cold Shock Protein; Cold Shock-Like Protein CspA; Cold Shock-Like Protein CspE; Cold Shock Protein CspA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MPDKDQTQSHAAFDNPLLDALADSPEPAQLVEISGRIKWFDLVKGYGFVVADNGLGDVLLHVTALRKDGHSKACEGARVV
CEAMRGTKGWQVFRVISLDAPAPAEKPDLSEEPPRNLSSREEPQVLPLGGFEDVKVKWFNRVKGFGFLSRGDGTEDIFVH
MEILRRHGISILHPGEELRARFGQGPKGLIAIEVRPLDAPAPVHH

Sequences:

>Translated_205_residues
MPDKDQTQSHAAFDNPLLDALADSPEPAQLVEISGRIKWFDLVKGYGFVVADNGLGDVLLHVTALRKDGHSKACEGARVV
CEAMRGTKGWQVFRVISLDAPAPAEKPDLSEEPPRNLSSREEPQVLPLGGFEDVKVKWFNRVKGFGFLSRGDGTEDIFVH
MEILRRHGISILHPGEELRARFGQGPKGLIAIEVRPLDAPAPVHH
>Mature_204_residues
PDKDQTQSHAAFDNPLLDALADSPEPAQLVEISGRIKWFDLVKGYGFVVADNGLGDVLLHVTALRKDGHSKACEGARVVC
EAMRGTKGWQVFRVISLDAPAPAEKPDLSEEPPRNLSSREEPQVLPLGGFEDVKVKWFNRVKGFGFLSRGDGTEDIFVHM
EILRRHGISILHPGEELRARFGQGPKGLIAIEVRPLDAPAPVHH

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22539; Mature: 22408

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKDQTQSHAAFDNPLLDALADSPEPAQLVEISGRIKWFDLVKGYGFVVADNGLGDVLL
CCCCCCCCCHHHCCCHHHHHHCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCHHHHH
HVTALRKDGHSKACEGARVVCEAMRGTKGWQVFRVISLDAPAPAEKPDLSEEPPRNLSSR
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
EEPQVLPLGGFEDVKVKWFNRVKGFGFLSRGDGTEDIFVHMEILRRHGISILHPGEELRA
CCCCEEECCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHH
RFGQGPKGLIAIEVRPLDAPAPVHH
HHCCCCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
PDKDQTQSHAAFDNPLLDALADSPEPAQLVEISGRIKWFDLVKGYGFVVADNGLGDVLL
CCCCCCCCHHHCCCHHHHHHCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCHHHHH
HVTALRKDGHSKACEGARVVCEAMRGTKGWQVFRVISLDAPAPAEKPDLSEEPPRNLSSR
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
EEPQVLPLGGFEDVKVKWFNRVKGFGFLSRGDGTEDIFVHMEILRRHGISILHPGEELRA
CCCCEEECCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHH
RFGQGPKGLIAIEVRPLDAPAPVHH
HHCCCCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA