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The map label for this gene is rlpA [H]

Identifier: 182678514

GI number: 182678514

Start: 1742261

End: 1743412

Strand: Reverse

Name: rlpA [H]

Synonym: Bind_1538

Alternate gene names: 182678514

Gene position: 1743412-1742261 (Counterclockwise)

Preceding gene: 182678520

Following gene: 182678513

Centisome position: 41.81

GC content: 62.93

Gene sequence:

>1152_bases
ATGCGTTCAAAACGGATCCTTTTCTCCACGTCGCGACGCACCGATCCGTTTTTGGGCGATCTCATTCCCTCCCAGTCTTT
CACCCGTGATTTTGCCGATTTCCTGCGCAATCGGCGCCTGACTCTCATCCTCGCGGCGAGCAGTGCCGCCTTGGGCCTTG
CCGGCTGTGCCCAGCAGCCGCAGCAGCGCATGGCCGCCGCCGCTCGTTCCAAGGAATATTTTCCGTCTTCCGTTTATGGC
AAGGCCAGCCCGCGCGTCATCGCCGATGGGCAGCCGGTCCCGCGTGGCGGCGGTACTTATCTCGTCGGCAAACCCTATAC
TGTTGCTGGCCACACCTATTATCCGAGTGAGAAACACACCACGAAGGTCGGCCTGGCCTCCTGGTATGGCGATGCCTTTC
ACGGCCGGCGCACGGCTAATGGCGAAATCTACGATCGCGATGCGGTCACCGCCGCAAGCCCGACCTTGCCCTTGCCGAGC
TATGCGCGTGTCACCAACCTGCGTAACCACTATTCCATGGTGGTGCGCGTCAATGATCGTGGCCCCTTTGCCTCAGACCG
CATCATGGACGTCTCCCACACCGTCGCCCAGGCGCTTGATTTTCACCGGACGGGCACGGCCAAGATCAAGGTCGAATATC
TCTCTCCGGCCAGTCTCAACGGCTCGGACGACAAGATTCTCCTTGCAACCTTGCGCCAGGATGGCCGACCGGCTTCGCTT
GGCCAAGAAGCTCCGGTCATGACGGCACAGAACGCCGAGCCTTTGCGCACTGCTTCCACGGCGCCGCTGGCCACGCCAAT
CTCAGCCACGCAGCCGGTGGCCCCGCAACCGCAGCCGGTCCAACCGTCGATCCCCAAGCCTGTTCCGGCTGTCCGTCTCC
AGCCAATGGACACTCCGACGCCGGCGCCTGTTGCCAGCCCGTCCAGTCTAGCCAATTCCTACGCGCCCAAATCCCCGTCG
AAAGCGGATTCCCAGGCGCTCGCCGCTTTGGCAGCCGCTTCGCTCGCCAAGCCTATGGTCAAGCCGGGCAAGGCCTTTGG
GGTAACAGTGGAAGAAAGACCGCTCCCCCCGTCACGCCCCTTTGATCTCAGCACCATCCCCGGCGCGGGTGTCCCGATTG
GCGCTTCGAGTCGCTCCGCTTCCCTCCGTTAG

Upstream 100 bases:

>100_bases
AAGAGGACTGTTCGAGGTGGTAGTGCCGCGAATGGGGCGTATTTACCCCACGATTCGGCGGGAATGCGCGTTGCGTTAGT
GAGTAGAGTTAGGAATGACC

Downstream 100 bases:

>100_bases
GAGGAAGCCTTCCAGGACATGCGAATGTATTCCGTCTATCGTATCAAACCCAAAGCGGACGCCCTTTTGGGTTTGATACG
TTTATAAGACATAGAGCATC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MRSKRILFSTSRRTDPFLGDLIPSQSFTRDFADFLRNRRLTLILAASSAALGLAGCAQQPQQRMAAAARSKEYFPSSVYG
KASPRVIADGQPVPRGGGTYLVGKPYTVAGHTYYPSEKHTTKVGLASWYGDAFHGRRTANGEIYDRDAVTAASPTLPLPS
YARVTNLRNHYSMVVRVNDRGPFASDRIMDVSHTVAQALDFHRTGTAKIKVEYLSPASLNGSDDKILLATLRQDGRPASL
GQEAPVMTAQNAEPLRTASTAPLATPISATQPVAPQPQPVQPSIPKPVPAVRLQPMDTPTPAPVASPSSLANSYAPKSPS
KADSQALAALAAASLAKPMVKPGKAFGVTVEERPLPPSRPFDLSTIPGAGVPIGASSRSASLR

Sequences:

>Translated_383_residues
MRSKRILFSTSRRTDPFLGDLIPSQSFTRDFADFLRNRRLTLILAASSAALGLAGCAQQPQQRMAAAARSKEYFPSSVYG
KASPRVIADGQPVPRGGGTYLVGKPYTVAGHTYYPSEKHTTKVGLASWYGDAFHGRRTANGEIYDRDAVTAASPTLPLPS
YARVTNLRNHYSMVVRVNDRGPFASDRIMDVSHTVAQALDFHRTGTAKIKVEYLSPASLNGSDDKILLATLRQDGRPASL
GQEAPVMTAQNAEPLRTASTAPLATPISATQPVAPQPQPVQPSIPKPVPAVRLQPMDTPTPAPVASPSSLANSYAPKSPS
KADSQALAALAAASLAKPMVKPGKAFGVTVEERPLPPSRPFDLSTIPGAGVPIGASSRSASLR
>Mature_383_residues
MRSKRILFSTSRRTDPFLGDLIPSQSFTRDFADFLRNRRLTLILAASSAALGLAGCAQQPQQRMAAAARSKEYFPSSVYG
KASPRVIADGQPVPRGGGTYLVGKPYTVAGHTYYPSEKHTTKVGLASWYGDAFHGRRTANGEIYDRDAVTAASPTLPLPS
YARVTNLRNHYSMVVRVNDRGPFASDRIMDVSHTVAQALDFHRTGTAKIKVEYLSPASLNGSDDKILLATLRQDGRPASL
GQEAPVMTAQNAEPLRTASTAPLATPISATQPVAPQPQPVQPSIPKPVPAVRLQPMDTPTPAPVASPSSLANSYAPKSPS
KADSQALAALAAASLAKPMVKPGKAFGVTVEERPLPPSRPFDLSTIPGAGVPIGASSRSASLR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=92, Percent_Identity=42.3913043478261, Blast_Score=82, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 40631; Mature: 40631

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKRILFSTSRRTDPFLGDLIPSQSFTRDFADFLRNRRLTLILAASSAALGLAGCAQQP
CCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHH
QQRMAAAARSKEYFPSSVYGKASPRVIADGQPVPRGGGTYLVGKPYTVAGHTYYPSEKHT
HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEEECCEECCCCCCC
TKVGLASWYGDAFHGRRTANGEIYDRDAVTAASPTLPLPSYARVTNLRNHYSMVVRVNDR
EEEEHHHHHCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCC
GPFASDRIMDVSHTVAQALDFHRTGTAKIKVEYLSPASLNGSDDKILLATLRQDGRPASL
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
GQEAPVMTAQNAEPLRTASTAPLATPISATQPVAPQPQPVQPSIPKPVPAVRLQPMDTPT
CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
PAPVASPSSLANSYAPKSPSKADSQALAALAAASLAKPMVKPGKAFGVTVEERPLPPSRP
CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
FDLSTIPGAGVPIGASSRSASLR
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRSKRILFSTSRRTDPFLGDLIPSQSFTRDFADFLRNRRLTLILAASSAALGLAGCAQQP
CCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHH
QQRMAAAARSKEYFPSSVYGKASPRVIADGQPVPRGGGTYLVGKPYTVAGHTYYPSEKHT
HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEEECCEECCCCCCC
TKVGLASWYGDAFHGRRTANGEIYDRDAVTAASPTLPLPSYARVTNLRNHYSMVVRVNDR
EEEEHHHHHCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCC
GPFASDRIMDVSHTVAQALDFHRTGTAKIKVEYLSPASLNGSDDKILLATLRQDGRPASL
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
GQEAPVMTAQNAEPLRTASTAPLATPISATQPVAPQPQPVQPSIPKPVPAVRLQPMDTPT
CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
PAPVASPSSLANSYAPKSPSKADSQALAALAAASLAKPMVKPGKAFGVTVEERPLPPSRP
CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
FDLSTIPGAGVPIGASSRSASLR
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]