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The map label for this gene is ltrA [H]

Identifier: 182678439

GI number: 182678439

Start: 1666629

End: 1667570

Strand: Direct

Name: ltrA [H]

Synonym: Bind_1459

Alternate gene names: 182678439

Gene position: 1666629-1667570 (Clockwise)

Preceding gene: 182678437

Following gene: 182678440

Centisome position: 39.97

GC content: 61.25

Gene sequence:

>942_bases
ATGACGCGGCAAATTGATTGGGAATTGATCCGTTCCTTCCTCGCCGTTTTGCGGCAGGGCAGTCTTTCGGCCGCGGCGCG
AAGCCTCGGCTTGACCCAGCCGACCCTCGGCAATCACATCAGCCAATTGGAAGCGTTTTTGGGCGCTTCACTCTTCACCC
GCTCGCGCCAGGGATTGACACCGACGCAAGCCGCCTTGGCGATCCTGCCCGAGGCCGAGGCGATGGATGCCGCCGCCCGG
GCTTTTGCGCGCCGGGCCTCCGGTGAAACCGACGCCATGCGCGGCGCGGTGCGAATCACGGCGAGCGAAGTGATGGGCAT
GGAGGTTCTGCCGCTCCTGCTGCGTGATTTCATGCGCACTTATCCTGAGATCGTGGTCGAACTCTCGCTCACCAATCGCA
CCGAAGATCTTTTGCGGCGCGATGCCGATATTGCCGTCCGCATGGCACGCCCGGCTCAAGGCGCGTTGTTGACGCGCCAC
ATAGGACGGATCGGGTTAGGAGCCTACGCGCACAGGGATTACCTCGAGACCCGTTCATGTCCCCGCGCCATCGATGATCT
CAAAAGTCATGTGCTGATTGGCCTCGATCGGGACCGTTTGCCATCGGTTGAGGGTGAGCCTGACGACGATGTTGGGGGAG
AACTGCGTTCCATCCTGCAAAACTGGCCCTGCACACTCAGAACCGATAACCATCTGGCTCACCTCGGCGCGATCCGGGCA
GGACTTGGTCTTGGCATTTGCCAGCATGGCGTCGCGCGTCGCGACCCTGATCTTGTGCCTATTCTGCCCGAGATCATCAA
ACCAGCCCTGGATTGCTGGCTGGCGATGCATGAGGATCTCAAAGGGAGCCAAAGAACGCTGGTGCTGTTTCGTTATCTTG
CGGCGGCGCTGAGCCAATATGCGGCGTCGAGCGCCGCTGGATGCGGAGATGGGCGGTCATGA

Upstream 100 bases:

>100_bases
CGTTCTCTATGATTCAGAAGAGGATCCGAGAAGATCTTCGGCTTGACGCCATATAAAATAAATCCCATGATTTATTGGGC
TATCCATAAGAAAATTTATA

Downstream 100 bases:

>100_bases
ATGGCGAAAGCGACCGCGTCGAACCTGAGAAGTGGGCACTATTTTTCGGATAAGTTTGATGCGTTTTCAAAAGCTTGGAA
CGCGTATCGGAGTCTGATTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MTRQIDWELIRSFLAVLRQGSLSAAARSLGLTQPTLGNHISQLEAFLGASLFTRSRQGLTPTQAALAILPEAEAMDAAAR
AFARRASGETDAMRGAVRITASEVMGMEVLPLLLRDFMRTYPEIVVELSLTNRTEDLLRRDADIAVRMARPAQGALLTRH
IGRIGLGAYAHRDYLETRSCPRAIDDLKSHVLIGLDRDRLPSVEGEPDDDVGGELRSILQNWPCTLRTDNHLAHLGAIRA
GLGLGICQHGVARRDPDLVPILPEIIKPALDCWLAMHEDLKGSQRTLVLFRYLAAALSQYAASSAAGCGDGRS

Sequences:

>Translated_313_residues
MTRQIDWELIRSFLAVLRQGSLSAAARSLGLTQPTLGNHISQLEAFLGASLFTRSRQGLTPTQAALAILPEAEAMDAAAR
AFARRASGETDAMRGAVRITASEVMGMEVLPLLLRDFMRTYPEIVVELSLTNRTEDLLRRDADIAVRMARPAQGALLTRH
IGRIGLGAYAHRDYLETRSCPRAIDDLKSHVLIGLDRDRLPSVEGEPDDDVGGELRSILQNWPCTLRTDNHLAHLGAIRA
GLGLGICQHGVARRDPDLVPILPEIIKPALDCWLAMHEDLKGSQRTLVLFRYLAAALSQYAASSAAGCGDGRS
>Mature_312_residues
TRQIDWELIRSFLAVLRQGSLSAAARSLGLTQPTLGNHISQLEAFLGASLFTRSRQGLTPTQAALAILPEAEAMDAAARA
FARRASGETDAMRGAVRITASEVMGMEVLPLLLRDFMRTYPEIVVELSLTNRTEDLLRRDADIAVRMARPAQGALLTRHI
GRIGLGAYAHRDYLETRSCPRAIDDLKSHVLIGLDRDRLPSVEGEPDDDVGGELRSILQNWPCTLRTDNHLAHLGAIRAG
LGLGICQHGVARRDPDLVPILPEIIKPALDCWLAMHEDLKGSQRTLVLFRYLAAALSQYAASSAAGCGDGRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=189, Percent_Identity=26.984126984127, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787589, Length=189, Percent_Identity=26.984126984127, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787601, Length=149, Percent_Identity=26.8456375838926, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789639, Length=178, Percent_Identity=25.8426966292135, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34103; Mature: 33971

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQIDWELIRSFLAVLRQGSLSAAARSLGLTQPTLGNHISQLEAFLGASLFTRSRQGLT
CCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PTQAALAILPEAEAMDAAARAFARRASGETDAMRGAVRITASEVMGMEVLPLLLRDFMRT
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHH
YPEIVVELSLTNRTEDLLRRDADIAVRMARPAQGALLTRHIGRIGLGAYAHRDYLETRSC
HHHHEEEHHCCCHHHHHHHCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PRAIDDLKSHVLIGLDRDRLPSVEGEPDDDVGGELRSILQNWPCTLRTDNHLAHLGAIRA
HHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHH
GLGLGICQHGVARRDPDLVPILPEIIKPALDCWLAMHEDLKGSQRTLVLFRYLAAALSQY
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AASSAAGCGDGRS
HHHCCCCCCCCCC
>Mature Secondary Structure 
TRQIDWELIRSFLAVLRQGSLSAAARSLGLTQPTLGNHISQLEAFLGASLFTRSRQGLT
CCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PTQAALAILPEAEAMDAAARAFARRASGETDAMRGAVRITASEVMGMEVLPLLLRDFMRT
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHH
YPEIVVELSLTNRTEDLLRRDADIAVRMARPAQGALLTRHIGRIGLGAYAHRDYLETRSC
HHHHEEEHHCCCHHHHHHHCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PRAIDDLKSHVLIGLDRDRLPSVEGEPDDDVGGELRSILQNWPCTLRTDNHLAHLGAIRA
HHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHH
GLGLGICQHGVARRDPDLVPILPEIIKPALDCWLAMHEDLKGSQRTLVLFRYLAAALSQY
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AASSAAGCGDGRS
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]