Click here to switch to the map view.

The map label for this gene is hypD [H]

Identifier: 182678148

GI number: 182678148

Start: 1344508

End: 1345629

Strand: Direct

Name: hypD [H]

Synonym: Bind_1163

Alternate gene names: 182678148

Gene position: 1344508-1345629 (Clockwise)

Preceding gene: 182678147

Following gene: 182678149

Centisome position: 32.24

GC content: 61.05

Gene sequence:

>1122_bases
ATGCGCTTCATCGATGAATTTCGCGACCCGGCCCTGGCCGAAAAGCTGTTTACTGAGATCGCGCAAACCGCCAAGCGGAT
CGGAGCCGTGCGAGAGCGGCCCGTGACGATCATGGAAGTCTGCGGTGGGCATACGCATACAATCTTTCGTTATGCGCTTG
AATCCCGCATGCCGGACAATGTTCAGTTCGCGCATGGTCCGGGCTGTCCTGTCTGTGTCCTGCCACGGGGAAGGGTTGAC
GACGCCATTACCATAGCGCGGCGTCCGGAAGTCATCTTCACGACCTTCGGTGATGCCATGCGTGTGCCGGGCGCTGAGGG
AAGCCTGATTCAGGCCCGTGCTGCGGGCGCCGATGTGCGCATGGTTTATTCTCCGCTCGATGCCTTGGCCCTCGCCGTGG
CCAATCCCGATCGGGAGGTGGTGTTTTTTGCGCTTGGCTTCGAGACCACGACACCCTCAACGGCGCTGACCGTGCTGCGC
GCAGCACGGTCAGGCGTCCGCAATTTCTCGCTTCTGTGCCATCACATCACCATCATTCCAACGCTGCGGGCCTTGTTGGA
ACAACCGGATTTTCCGATCGATGGATTCATCGGACCAGGCCATGTCTCGATGGTGATCGGCACCAAGCCGTTTCACTTCA
TTCCAGAAGAATTTGGCCTGCCCTTGGTCGTGGCCGGATTCGAACCCCTGGATGTCCTGCAATCTCTGCTGATGGTTCTG
CGCCAGATCGAGATGGGGCGTGCCTGCGTGGAAAACCAATATTCACGCGTCGTTCCTCCCGATGGCAATAAGGCTGCCAT
GGCGGCTGTGGCACAGGTCTATGAGACGCGGCCGCAATGCGAATGGCGGGGGCTTGGCACCATTGCGGAATCAGGCGTGC
GTTTGGCTGAGCCTTGGGCGGCCTTCGACGCGGAACGGCGTTTCGAGCCGGCCGCGCGTCATACGCCCGATCCCGAAGGG
TGCCGCTGCAACGAAGTGCTCGTCGGCCGCATTCGTCCGTGGGATTGCGCGGCTTTCGGCACGACCTGCCGGCCTGACGC
GCCTCTTGGCGCCCTCATGGTGTCATCCGAGGGAGCCTGCGCGGCTTACTACCAATATCAAGGAATGAAGGGGGCCGCAT
GA

Upstream 100 bases:

>100_bases
CCGAGATCGGGGAACTGGACGGCGAACTTGCGGCCATGCGGGATTCGCAAGAGGCGCGAAATTCACATGAGGCGATGGAG
ATACAAGGGTGAGCGGCACA

Downstream 100 bases:

>100_bases
GCGGCGAGGAGCCGATTTCCGGCATTGGTCCTGGCGGCCGGATCACTTTGGCGCATGGAGGTGGCGGCACCGCGATGCGC
GATTTGATCGAACGCGTCTT

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MRFIDEFRDPALAEKLFTEIAQTAKRIGAVRERPVTIMEVCGGHTHTIFRYALESRMPDNVQFAHGPGCPVCVLPRGRVD
DAITIARRPEVIFTTFGDAMRVPGAEGSLIQARAAGADVRMVYSPLDALALAVANPDREVVFFALGFETTTPSTALTVLR
AARSGVRNFSLLCHHITIIPTLRALLEQPDFPIDGFIGPGHVSMVIGTKPFHFIPEEFGLPLVVAGFEPLDVLQSLLMVL
RQIEMGRACVENQYSRVVPPDGNKAAMAAVAQVYETRPQCEWRGLGTIAESGVRLAEPWAAFDAERRFEPAARHTPDPEG
CRCNEVLVGRIRPWDCAAFGTTCRPDAPLGALMVSSEGACAAYYQYQGMKGAA

Sequences:

>Translated_373_residues
MRFIDEFRDPALAEKLFTEIAQTAKRIGAVRERPVTIMEVCGGHTHTIFRYALESRMPDNVQFAHGPGCPVCVLPRGRVD
DAITIARRPEVIFTTFGDAMRVPGAEGSLIQARAAGADVRMVYSPLDALALAVANPDREVVFFALGFETTTPSTALTVLR
AARSGVRNFSLLCHHITIIPTLRALLEQPDFPIDGFIGPGHVSMVIGTKPFHFIPEEFGLPLVVAGFEPLDVLQSLLMVL
RQIEMGRACVENQYSRVVPPDGNKAAMAAVAQVYETRPQCEWRGLGTIAESGVRLAEPWAAFDAERRFEPAARHTPDPEG
CRCNEVLVGRIRPWDCAAFGTTCRPDAPLGALMVSSEGACAAYYQYQGMKGAA
>Mature_373_residues
MRFIDEFRDPALAEKLFTEIAQTAKRIGAVRERPVTIMEVCGGHTHTIFRYALESRMPDNVQFAHGPGCPVCVLPRGRVD
DAITIARRPEVIFTTFGDAMRVPGAEGSLIQARAAGADVRMVYSPLDALALAVANPDREVVFFALGFETTTPSTALTVLR
AARSGVRNFSLLCHHITIIPTLRALLEQPDFPIDGFIGPGHVSMVIGTKPFHFIPEEFGLPLVVAGFEPLDVLQSLLMVL
RQIEMGRACVENQYSRVVPPDGNKAAMAAVAQVYETRPQCEWRGLGTIAESGVRLAEPWAAFDAERRFEPAARHTPDPEG
CRCNEVLVGRIRPWDCAAFGTTCRPDAPLGALMVSSEGACAAYYQYQGMKGAA

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=373, Percent_Identity=56.5683646112601, Blast_Score=439, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40683; Mature: 40683

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFIDEFRDPALAEKLFTEIAQTAKRIGAVRERPVTIMEVCGGHTHTIFRYALESRMPDN
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCC
VQFAHGPGCPVCVLPRGRVDDAITIARRPEVIFTTFGDAMRVPGAEGSLIQARAAGADVR
CEEECCCCCCEEEECCCCCCCEEEEECCCCEEEEECCCHHCCCCCCCCEEEEECCCCCEE
MVYSPLDALALAVANPDREVVFFALGFETTTPSTALTVLRAARSGVRNFSLLCHHITIIP
EEHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
TLRALLEQPDFPIDGFIGPGHVSMVIGTKPFHFIPEEFGLPLVVAGFEPLDVLQSLLMVL
HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEECHHHCCCCEEEECCCHHHHHHHHHHHH
RQIEMGRACVENQYSRVVPPDGNKAAMAAVAQVYETRPQCEWRGLGTIAESGVRLAEPWA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEECCCHH
AFDAERRFEPAARHTPDPEGCRCNEVLVGRIRPWDCAAFGTTCRPDAPLGALMVSSEGAC
HHCHHHCCCCHHCCCCCCCCCEECCEEEECCCCCCHHHCCCCCCCCCCCCEEEEECCCCE
AAYYQYQGMKGAA
EEEEEECCCCCCC
>Mature Secondary Structure
MRFIDEFRDPALAEKLFTEIAQTAKRIGAVRERPVTIMEVCGGHTHTIFRYALESRMPDN
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCC
VQFAHGPGCPVCVLPRGRVDDAITIARRPEVIFTTFGDAMRVPGAEGSLIQARAAGADVR
CEEECCCCCCEEEECCCCCCCEEEEECCCCEEEEECCCHHCCCCCCCCEEEEECCCCCEE
MVYSPLDALALAVANPDREVVFFALGFETTTPSTALTVLRAARSGVRNFSLLCHHITIIP
EEHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
TLRALLEQPDFPIDGFIGPGHVSMVIGTKPFHFIPEEFGLPLVVAGFEPLDVLQSLLMVL
HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEECHHHCCCCEEEECCCHHHHHHHHHHHH
RQIEMGRACVENQYSRVVPPDGNKAAMAAVAQVYETRPQCEWRGLGTIAESGVRLAEPWA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEECCCHH
AFDAERRFEPAARHTPDPEGCRCNEVLVGRIRPWDCAAFGTTCRPDAPLGALMVSSEGAC
HHCHHHCCCCHHCCCCCCCCCEECCEEEECCCCCCHHHCCCCCCCCCCCCEEEEECCCCE
AAYYQYQGMKGAA
EEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]