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The map label for this gene is secD [H]

Identifier: 182677988

GI number: 182677988

Start: 1148591

End: 1149550

Strand: Direct

Name: secD [H]

Synonym: Bind_1002

Alternate gene names: 182677988

Gene position: 1148591-1149550 (Clockwise)

Preceding gene: 182677987

Following gene: 182677989

Centisome position: 27.54

GC content: 57.5

Gene sequence:

>960_bases
ATGAAACTGCTGCGCCTCGCGCCTGAAAATACCCGCTTTCCCTTCATGCGCCTGCGCCGGCTGAGCTATCCATTCTCGGC
CCTGATGTCGATTCTGGCGGTCACGATCTTTCTCACCTGGGGCATGAATTTCGGCATCGATTTTTCGGGCGGCACTTTGC
TTGAATTACGCGCCAAGGAAGGACCCGCCGATCTCGTCGAATTGCGCGAATTGGGGGATCATCTCAATATCGGCGATATT
GAAGTCCAGGGTTTTGGGACGCCTTCCGATGTGACCGTGCGTTTTGGCCTCCAGCCCGGCGGCGACGCGGCGCAGGAAGC
AGCCGTCAATCGCGTGCGGCAAACCATCGGCGAGCGCTATGACATCCGCAGGATCGAGGTCGTTGGCCCGCGTGTTTCGG
GTGAGCTCGTCCAGTCCGGCACGCTCGGCGTCGTTTTGTCGATCATCGCCGTGCTCGGCTATCTCTGGTTCCGTTTCGAA
TGGCAATTTGCCGTCGGCGCCATCATCGCCACAATGCATGATCTCTTGCTGACAGTCGGCTTTTTCTCCGTCACGCAGCT
CGAATTCAACACGACATCCATTGCCGCCATCCTGACCATTGTCGGCTATTCCTTGAACGAAACGGTTGTCGTGCTCGACC
GTATTCGTGAAATGATGAAGAAATACCGGAAGATCCCGACCGATCAATTGATCGATCTTTCGGTGAATGCGGTGCTGCCG
CGCACGATCATGACGGCGACGACCGTGTTCCTCGCGCTGCTCTCACTCGTGATTTTCGGTGGCCAGGTGATCCGGTCGTT
TTCGCTCGCCATGATCTGGGGCATTGTGGTCGCGACTTATTCCTCGGTCTTCATCTGCTCGCCGATGCTGATCTATCTCG
GTCTCCGCAATGAGGGCGGCGAGACGGCCAAGGCCGATACGCAATCGCCTTCGGGGAAAGCGGCGAAGGCTTCTGTATGA

Upstream 100 bases:

>100_bases
GATGATTACTCTCTGGTATCGCTCCAAGCGCCCGACCCAATTGCCGATCTAAGGCACGGGTCTGCTGCTTGAGAACACTT
GAAAAGGCTTGGGATTTTCG

Downstream 100 bases:

>100_bases
GACAACAGCCACGAGAATGGCTTTGTCAGACTTTCGAATGTTCGTCCTGCCCGTGACGAGGTGAAAATTCAAAACGGCAC
CAAGAGTTATTGATCACACT

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKLLRLAPENTRFPFMRLRRLSYPFSALMSILAVTIFLTWGMNFGIDFSGGTLLELRAKEGPADLVELRELGDHLNIGDI
EVQGFGTPSDVTVRFGLQPGGDAAQEAAVNRVRQTIGERYDIRRIEVVGPRVSGELVQSGTLGVVLSIIAVLGYLWFRFE
WQFAVGAIIATMHDLLLTVGFFSVTQLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMKKYRKIPTDQLIDLSVNAVLP
RTIMTATTVFLALLSLVIFGGQVIRSFSLAMIWGIVVATYSSVFICSPMLIYLGLRNEGGETAKADTQSPSGKAAKASV

Sequences:

>Translated_319_residues
MKLLRLAPENTRFPFMRLRRLSYPFSALMSILAVTIFLTWGMNFGIDFSGGTLLELRAKEGPADLVELRELGDHLNIGDI
EVQGFGTPSDVTVRFGLQPGGDAAQEAAVNRVRQTIGERYDIRRIEVVGPRVSGELVQSGTLGVVLSIIAVLGYLWFRFE
WQFAVGAIIATMHDLLLTVGFFSVTQLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMKKYRKIPTDQLIDLSVNAVLP
RTIMTATTVFLALLSLVIFGGQVIRSFSLAMIWGIVVATYSSVFICSPMLIYLGLRNEGGETAKADTQSPSGKAAKASV
>Mature_319_residues
MKLLRLAPENTRFPFMRLRRLSYPFSALMSILAVTIFLTWGMNFGIDFSGGTLLELRAKEGPADLVELRELGDHLNIGDI
EVQGFGTPSDVTVRFGLQPGGDAAQEAAVNRVRQTIGERYDIRRIEVVGPRVSGELVQSGTLGVVLSIIAVLGYLWFRFE
WQFAVGAIIATMHDLLLTVGFFSVTQLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMKKYRKIPTDQLIDLSVNAVLP
RTIMTATTVFLALLSLVIFGGQVIRSFSLAMIWGIVVATYSSVFICSPMLIYLGLRNEGGETAKADTQSPSGKAAKASV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=289, Percent_Identity=33.2179930795848, Blast_Score=193, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35004; Mature: 35004

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLRLAPENTRFPFMRLRRLSYPFSALMSILAVTIFLTWGMNFGIDFSGGTLLELRAKE
CCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCC
GPADLVELRELGDHLNIGDIEVQGFGTPSDVTVRFGLQPGGDAAQEAAVNRVRQTIGERY
CCHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
DIRRIEVVGPRVSGELVQSGTLGVVLSIIAVLGYLWFRFEWQFAVGAIIATMHDLLLTVG
CCEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFSVTQLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMKKYRKIPTDQLIDLSVNAVLP
HHHHEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH
RTIMTATTVFLALLSLVIFGGQVIRSFSLAMIWGIVVATYSSVFICSPMLIYLGLRNEGG
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
ETAKADTQSPSGKAAKASV
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLLRLAPENTRFPFMRLRRLSYPFSALMSILAVTIFLTWGMNFGIDFSGGTLLELRAKE
CCCEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCC
GPADLVELRELGDHLNIGDIEVQGFGTPSDVTVRFGLQPGGDAAQEAAVNRVRQTIGERY
CCHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
DIRRIEVVGPRVSGELVQSGTLGVVLSIIAVLGYLWFRFEWQFAVGAIIATMHDLLLTVG
CCEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFSVTQLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMKKYRKIPTDQLIDLSVNAVLP
HHHHEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH
RTIMTATTVFLALLSLVIFGGQVIRSFSLAMIWGIVVATYSSVFICSPMLIYLGLRNEGG
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
ETAKADTQSPSGKAAKASV
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]