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The map label for this gene is secD [H]

Identifier: 182677987

GI number: 182677987

Start: 1146947

End: 1148542

Strand: Direct

Name: secD [H]

Synonym: Bind_1001

Alternate gene names: 182677987

Gene position: 1146947-1148542 (Clockwise)

Preceding gene: 182677986

Following gene: 182677988

Centisome position: 27.5

GC content: 60.09

Gene sequence:

>1596_bases
ATGCTGCGTTTCGCGACCTGGAAAATCGCCTCGATCATCGGCATGACGTTGTTCGCTTTTCTCGTCATCCTGCCGAGCCT
CTTCTCTCCAGAGCAACGCGAGGCCGTGAGCGCGCATCTGCCGCATTGGCTGCCCTTGCGCGCTATTGTTCTGGGTCTCG
ATCTGCAAGGCGGCTCGCATGTCCTGCTCGAGGTCGATGCGCCCTCCGTGCTGAAAACCCAGGTCGATAGCCTGCGCGAT
GATTTGCGGCGGATCTTGCGCGAGGAGAAGATCGGCATTTCGGGTGGTATCGGCCTCTTGCCGCGTGGCGTCCAATTCCG
CCTCGCTGATCCAGCCGAACGCGCCAAGCTTATGCCGAAGCTCCAGCAATTGGCGGGTTCCAGCGGCGTGAACCTGCTGG
GTGGCAATCGCGCGGCCTCTTTCGACATTGTCGAAAAGGACGATGGCCTGATCCAGGTTGTTGTGACCGATGCCGCCATC
AACGACCGCGTGCGGCGCGCGGTTGATCAATCAATCGAAGTTTTACGGCGCCGCGTCGATGCGCTCGGAACGACAGAGCC
GAACATTCAGCGCCAGGGCAATGACCGCATCCTTGTCGAAGTGCCGGGTCTGCAGGATACATCGAAGCTCAAGGAAATTC
TCGGCACGACAGCGAAGCTCGAATTCCGCCTTGTCGCGGAACCTGGCACCGATCCGAACGAGATCGAGCAACTCGACCAG
GTCGAGAGCAACGGCAAGCTGCCGATCGAGAAACGGGTGATGGTGCAGGGCGAGGACTTGACCGATGCCCAGCCGGGGTT
CGACAGCCGCACGCAGGAGCCGGTGGTCAATTTCCGCTTTAATATTCGCGGTGGTCAGAAATTTGGTGAAGTGACCGCCG
CTAATGTCGGGCGTCCTTTCGCGATTGTGCTCGATGGCAAAGTGATTTCCGCGCCGCGTATCAAGGGCCCGATCACCGGC
GGCCAGGGCGAGATTTCCGGCAGTTTCACAGTTGAGCAGGCGAATAATCTCGCCATTCTCCTGCGCGCCGGTGCGTTGCC
CGCCAAATTGAGCATTGTGGAGGAGCGCACGGTCGGGCCGGGCCTGGGGCAGGATTCGATCAATGCCGGTAAACGGGCGG
CCTATGTCGGTGCCGCGCTCGTCGCACTTTATATGCTCGTGACCTACGGCATTTTCGGCGTCTTCGCCAATCTCGCCCTT
CTGGTCCATATCGCCTTCATTTTTGCGGGCCTGGTACTCCTCGGCGCCACCCTGACCCTGCCGGGCATTGCCGGCATCGT
TCTTACCATCGGCATGGCGGTCGATTCCAACGTCTTGATCTATGAACGCATCCGTGAGGAAGCACATGCAGGGCGTTCGA
TCGTCTCGGCGCTCGATGCCGGCTTCAACCGCGCCTTCGCGACGATTGTCGATTCCAATGTCACGATGTTTGTCGCCGCG
GCCATTCTCTATTTCCTCGGCTCCGGGCCGGTACGCGGTTTCGCCGTTTCGCTGGCGCTCGGCATTTTGACGACCATCGT
CACCGCCGTGACCATGACCCGCATGATGATTACTCTCTGGTATCGCTCCAAGCGCCCGACCCAATTGCCGATCTAA

Upstream 100 bases:

>100_bases
TGATCGTCCAATTTTGCGTGCTCCTCCAATTTTGACGATCCGATCGCTCGATAAGAGGGCCGGTGGGTGGATTTGCTCCT
TCTAGAAAGTGTCTAAAGTC

Downstream 100 bases:

>100_bases
GGCACGGGTCTGCTGCTTGAGAACACTTGAAAAGGCTTGGGATTTTCGATGAAACTGCTGCGCCTCGCGCCTGAAAATAC
CCGCTTTCCCTTCATGCGCC

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MLRFATWKIASIIGMTLFAFLVILPSLFSPEQREAVSAHLPHWLPLRAIVLGLDLQGGSHVLLEVDAPSVLKTQVDSLRD
DLRRILREEKIGISGGIGLLPRGVQFRLADPAERAKLMPKLQQLAGSSGVNLLGGNRAASFDIVEKDDGLIQVVVTDAAI
NDRVRRAVDQSIEVLRRRVDALGTTEPNIQRQGNDRILVEVPGLQDTSKLKEILGTTAKLEFRLVAEPGTDPNEIEQLDQ
VESNGKLPIEKRVMVQGEDLTDAQPGFDSRTQEPVVNFRFNIRGGQKFGEVTAANVGRPFAIVLDGKVISAPRIKGPITG
GQGEISGSFTVEQANNLAILLRAGALPAKLSIVEERTVGPGLGQDSINAGKRAAYVGAALVALYMLVTYGIFGVFANLAL
LVHIAFIFAGLVLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEAHAGRSIVSALDAGFNRAFATIVDSNVTMFVAA
AILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMITLWYRSKRPTQLPI

Sequences:

>Translated_531_residues
MLRFATWKIASIIGMTLFAFLVILPSLFSPEQREAVSAHLPHWLPLRAIVLGLDLQGGSHVLLEVDAPSVLKTQVDSLRD
DLRRILREEKIGISGGIGLLPRGVQFRLADPAERAKLMPKLQQLAGSSGVNLLGGNRAASFDIVEKDDGLIQVVVTDAAI
NDRVRRAVDQSIEVLRRRVDALGTTEPNIQRQGNDRILVEVPGLQDTSKLKEILGTTAKLEFRLVAEPGTDPNEIEQLDQ
VESNGKLPIEKRVMVQGEDLTDAQPGFDSRTQEPVVNFRFNIRGGQKFGEVTAANVGRPFAIVLDGKVISAPRIKGPITG
GQGEISGSFTVEQANNLAILLRAGALPAKLSIVEERTVGPGLGQDSINAGKRAAYVGAALVALYMLVTYGIFGVFANLAL
LVHIAFIFAGLVLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEAHAGRSIVSALDAGFNRAFATIVDSNVTMFVAA
AILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMITLWYRSKRPTQLPI
>Mature_531_residues
MLRFATWKIASIIGMTLFAFLVILPSLFSPEQREAVSAHLPHWLPLRAIVLGLDLQGGSHVLLEVDAPSVLKTQVDSLRD
DLRRILREEKIGISGGIGLLPRGVQFRLADPAERAKLMPKLQQLAGSSGVNLLGGNRAASFDIVEKDDGLIQVVVTDAAI
NDRVRRAVDQSIEVLRRRVDALGTTEPNIQRQGNDRILVEVPGLQDTSKLKEILGTTAKLEFRLVAEPGTDPNEIEQLDQ
VESNGKLPIEKRVMVQGEDLTDAQPGFDSRTQEPVVNFRFNIRGGQKFGEVTAANVGRPFAIVLDGKVISAPRIKGPITG
GQGEISGSFTVEQANNLAILLRAGALPAKLSIVEERTVGPGLGQDSINAGKRAAYVGAALVALYMLVTYGIFGVFANLAL
LVHIAFIFAGLVLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEAHAGRSIVSALDAGFNRAFATIVDSNVTMFVAA
AILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMITLWYRSKRPTQLPI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=536, Percent_Identity=36.7537313432836, Blast_Score=301, Evalue=1e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57071; Mature: 57071

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFATWKIASIIGMTLFAFLVILPSLFSPEQREAVSAHLPHWLPLRAIVLGLDLQGGSH
CCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHEEEECCCCCE
VLLEVDAPSVLKTQVDSLRDDLRRILREEKIGISGGIGLLPRGVQFRLADPAERAKLMPK
EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
LQQLAGSSGVNLLGGNRAASFDIVEKDDGLIQVVVTDAAINDRVRRAVDQSIEVLRRRVD
HHHHCCCCCCEEECCCCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
ALGTTEPNIQRQGNDRILVEVPGLQDTSKLKEILGTTAKLEFRLVAEPGTDPNEIEQLDQ
HCCCCCCCCEECCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHH
VESNGKLPIEKRVMVQGEDLTDAQPGFDSRTQEPVVNFRFNIRGGQKFGEVTAANVGRPF
HHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCE
AIVLDGKVISAPRIKGPITGGQGEISGSFTVEQANNLAILLRAGALPAKLSIVEERTVGP
EEEECCEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEHHCCCCC
GLGQDSINAGKRAAYVGAALVALYMLVTYGIFGVFANLALLVHIAFIFAGLVLLGATLTL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGIAGIVLTIGMAVDSNVLIYERIREEAHAGRSIVSALDAGFNRAFATIVDSNVTMFVAA
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMITLWYRSKRPTQLPI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLRFATWKIASIIGMTLFAFLVILPSLFSPEQREAVSAHLPHWLPLRAIVLGLDLQGGSH
CCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHEEEECCCCCE
VLLEVDAPSVLKTQVDSLRDDLRRILREEKIGISGGIGLLPRGVQFRLADPAERAKLMPK
EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
LQQLAGSSGVNLLGGNRAASFDIVEKDDGLIQVVVTDAAINDRVRRAVDQSIEVLRRRVD
HHHHCCCCCCEEECCCCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
ALGTTEPNIQRQGNDRILVEVPGLQDTSKLKEILGTTAKLEFRLVAEPGTDPNEIEQLDQ
HCCCCCCCCEECCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHH
VESNGKLPIEKRVMVQGEDLTDAQPGFDSRTQEPVVNFRFNIRGGQKFGEVTAANVGRPF
HHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCE
AIVLDGKVISAPRIKGPITGGQGEISGSFTVEQANNLAILLRAGALPAKLSIVEERTVGP
EEEECCEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEHHCCCCC
GLGQDSINAGKRAAYVGAALVALYMLVTYGIFGVFANLALLVHIAFIFAGLVLLGATLTL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGIAGIVLTIGMAVDSNVLIYERIREEAHAGRSIVSALDAGFNRAFATIVDSNVTMFVAA
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMITLWYRSKRPTQLPI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA