| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is 182677799
Identifier: 182677799
GI number: 182677799
Start: 896991
End: 898514
Strand: Direct
Name: 182677799
Synonym: Bind_0806
Alternate gene names: NA
Gene position: 896991-898514 (Clockwise)
Preceding gene: 182677798
Following gene: 182677801
Centisome position: 21.51
GC content: 62.8
Gene sequence:
>1524_bases ATGAGCAAGCGGTTCGATTGGGACGCGCGAAACAATAATGGCCGCGACGCCAATGGCTTGGAACTGGATTTCCATGCCTT GTGGCAGGCTGTCTTGCGCCAGAAATGGCGGCTGGTCACGCCGGCTTTGGTCGTTCTTGCCGTACTCGGCTTGTGGCTGG CCTTGGTGCCGCCCCGCTATACAGCGGTGGCGCGGGTTGCCGGGGTGGCGCCGGAGAATGGGCTCGAAAGCCCGTTGGAC GGGGTGACATTGGCGCGCGCCTCCTCACAGGACGCGCCGCAGTCCGTTTTGGAGCCGAAGGCTCTGAAAAATCAACTCCT TTTGCTTTCCTCCGAGGATTTCGCCCGCCGCGCCCTTTCGGAATTGCGCGACAGCGGGGATCTGCCGACGAGCGTTGAGC TTGCCGATCTGGAAAATGGCGCCGTCTCTGCCAGGACAGGGCAGGCTTTACGGCCGCTGTTACGACGGATCGGTTTCCAG GCCGCTGCGGAATCCGCCCCCGACAGCCTTCTCCTTGACTGGCTGCGTCGCGGGCTGGCGATCAAGGTGCGTGAAGGAAC GAGCGATCTTTCCATCACTTTCGAGGCCGAGGATGCCGGGCTTGCGGCCAAGGTCGCCAATAAATATGCCGAGCTCTATC TCGACCTGCAGCCCTCCGCGAATAGCGTCGCGGCGGCTGTGGCAGCGCGGCAGTCCGCTTTCCCGCATCACCCTTCCGTG CTGGTGCTGGGTCCTCTGGCGACTTTGATGATCGGTTTCGCGGCCCTCTTTGCCAGGGAATATCGGGCAGGACGCTTGGC GCCGGCGAGCGCCGCCATGCTCCAGCAGCCGCGCGCCCTTGGCGAAATCAAATTATTCGCGCGTTTCGATGAAAGACCTT CGGCCGAAGGGCCGGGTGGCCTTTATCCTCTCCCATCACCGCAGGCAAATGAGATGGCGGATGCGGCCGAGATTGCCGTG CGCATTCGCAAAAGCCGGCGGGATGACCTTGCGACCCACATCGTCGTGACGGGAGTCAATCTCGCTGGCAAAAGTGCGCG GCCGATGATCGGCCTTGGCCGCCAATTGGCCCAGGAAGGCCGCACAATTCTCGTCGATCTCGACGGCGCCTGGCAGGGGG AAAATCCCGCCTCCGACAAGGTTGAGGAAAAGCCAGGCCTTGCGGAAGTGCTGGACGGGCAGGCCTCCTTCGCCGAAGCC ATTCGGCGCGATCCGGCCTCGCGCCTGCATATTCTGCTCGCTGAGCCGGACCGGTCTTTCGACCTGCGCGCCTTCGATGT CGTGTTCGAGGCCTTGTCGCAAACCTATGATTTTGTCCTGGTCACCGCGCCGCCGCTGGATCAAAGCCCGCTCGCCAGCA GACTCACCGCCAAGGCGAATCTCGTGATTCTGGCGACGCTCGCGCAGCATGAGCGCCTGATTGAATCCGCCCATGCGGAT TTGCGGCAAAATACGGGCTGTGAAGTGCTCGTCATCGGGGTCGGCGGCAGGCTCATGCCGCGCCTCGTTGAAAATGCAGC ATGA
Upstream 100 bases:
>100_bases TTTGGCCACAGGGTTTTATGAAATGTCGTTTATTTTATCTTTGTTAACCTTGCGGCAACCTTAAACCTTTTTGATAGCGT CACCCGAATTCGAGGTGGCG
Downstream 100 bases:
>100_bases AATCTAGAGCATCAGCCCCAAAAGTGGCTCCCACTTTTGGGGCTGATGCGTTTTCAAAAAGATAGAGCATTGGGCAGGGT TCAATTTGAAAGTCCGATGC
Product: lipopolysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 507; Mature: 506
Protein sequence:
>507_residues MSKRFDWDARNNNGRDANGLELDFHALWQAVLRQKWRLVTPALVVLAVLGLWLALVPPRYTAVARVAGVAPENGLESPLD GVTLARASSQDAPQSVLEPKALKNQLLLLSSEDFARRALSELRDSGDLPTSVELADLENGAVSARTGQALRPLLRRIGFQ AAAESAPDSLLLDWLRRGLAIKVREGTSDLSITFEAEDAGLAAKVANKYAELYLDLQPSANSVAAAVAARQSAFPHHPSV LVLGPLATLMIGFAALFAREYRAGRLAPASAAMLQQPRALGEIKLFARFDERPSAEGPGGLYPLPSPQANEMADAAEIAV RIRKSRRDDLATHIVVTGVNLAGKSARPMIGLGRQLAQEGRTILVDLDGAWQGENPASDKVEEKPGLAEVLDGQASFAEA IRRDPASRLHILLAEPDRSFDLRAFDVVFEALSQTYDFVLVTAPPLDQSPLASRLTAKANLVILATLAQHERLIESAHAD LRQNTGCEVLVIGVGGRLMPRLVENAA
Sequences:
>Translated_507_residues MSKRFDWDARNNNGRDANGLELDFHALWQAVLRQKWRLVTPALVVLAVLGLWLALVPPRYTAVARVAGVAPENGLESPLD GVTLARASSQDAPQSVLEPKALKNQLLLLSSEDFARRALSELRDSGDLPTSVELADLENGAVSARTGQALRPLLRRIGFQ AAAESAPDSLLLDWLRRGLAIKVREGTSDLSITFEAEDAGLAAKVANKYAELYLDLQPSANSVAAAVAARQSAFPHHPSV LVLGPLATLMIGFAALFAREYRAGRLAPASAAMLQQPRALGEIKLFARFDERPSAEGPGGLYPLPSPQANEMADAAEIAV RIRKSRRDDLATHIVVTGVNLAGKSARPMIGLGRQLAQEGRTILVDLDGAWQGENPASDKVEEKPGLAEVLDGQASFAEA IRRDPASRLHILLAEPDRSFDLRAFDVVFEALSQTYDFVLVTAPPLDQSPLASRLTAKANLVILATLAQHERLIESAHAD LRQNTGCEVLVIGVGGRLMPRLVENAA >Mature_506_residues SKRFDWDARNNNGRDANGLELDFHALWQAVLRQKWRLVTPALVVLAVLGLWLALVPPRYTAVARVAGVAPENGLESPLDG VTLARASSQDAPQSVLEPKALKNQLLLLSSEDFARRALSELRDSGDLPTSVELADLENGAVSARTGQALRPLLRRIGFQA AAESAPDSLLLDWLRRGLAIKVREGTSDLSITFEAEDAGLAAKVANKYAELYLDLQPSANSVAAAVAARQSAFPHHPSVL VLGPLATLMIGFAALFAREYRAGRLAPASAAMLQQPRALGEIKLFARFDERPSAEGPGGLYPLPSPQANEMADAAEIAVR IRKSRRDDLATHIVVTGVNLAGKSARPMIGLGRQLAQEGRTILVDLDGAWQGENPASDKVEEKPGLAEVLDGQASFAEAI RRDPASRLHILLAEPDRSFDLRAFDVVFEALSQTYDFVLVTAPPLDQSPLASRLTAKANLVILATLAQHERLIESAHADL RQNTGCEVLVIGVGGRLMPRLVENAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54556; Mature: 54425
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRFDWDARNNNGRDANGLELDFHALWQAVLRQKWRLVTPALVVLAVLGLWLALVPPRY CCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH TAVARVAGVAPENGLESPLDGVTLARASSQDAPQSVLEPKALKNQLLLLSSEDFARRALS HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCHHHHCCEEEECCCHHHHHHHH ELRDSGDLPTSVELADLENGAVSARTGQALRPLLRRIGFQAAAESAPDSLLLDWLRRGLA HHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCHHHHHHHHHCCCE IKVREGTSDLSITFEAEDAGLAAKVANKYAELYLDLQPSANSVAAAVAARQSAFPHHPSV EEEECCCCCEEEEEECCCCCHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCE LVLGPLATLMIGFAALFAREYRAGRLAPASAAMLQQPRALGEIKLFARFDERPSAEGPGG EEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHEEEEEECCCCCCCCCCCC LYPLPSPQANEMADAAEIAVRIRKSRRDDLATHIVVTGVNLAGKSARPMIGLGRQLAQEG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHCC RTILVDLDGAWQGENPASDKVEEKPGLAEVLDGQASFAEAIRRDPASRLHILLAEPDRSF CEEEEEECCCCCCCCCCCCCHHCCCCHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCC DLRAFDVVFEALSQTYDFVLVTAPPLDQSPLASRLTAKANLVILATLAQHERLIESAHAD CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH LRQNTGCEVLVIGVGGRLMPRLVENAA HHCCCCCEEEEECCCCHHHHHHHHCCC >Mature Secondary Structure SKRFDWDARNNNGRDANGLELDFHALWQAVLRQKWRLVTPALVVLAVLGLWLALVPPRY CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH TAVARVAGVAPENGLESPLDGVTLARASSQDAPQSVLEPKALKNQLLLLSSEDFARRALS HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCHHHHCCEEEECCCHHHHHHHH ELRDSGDLPTSVELADLENGAVSARTGQALRPLLRRIGFQAAAESAPDSLLLDWLRRGLA HHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCHHHHHHHHHCCCE IKVREGTSDLSITFEAEDAGLAAKVANKYAELYLDLQPSANSVAAAVAARQSAFPHHPSV EEEECCCCCEEEEEECCCCCHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCCCCCCE LVLGPLATLMIGFAALFAREYRAGRLAPASAAMLQQPRALGEIKLFARFDERPSAEGPGG EEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHEEEEEECCCCCCCCCCCC LYPLPSPQANEMADAAEIAVRIRKSRRDDLATHIVVTGVNLAGKSARPMIGLGRQLAQEG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHCC RTILVDLDGAWQGENPASDKVEEKPGLAEVLDGQASFAEAIRRDPASRLHILLAEPDRSF CEEEEEECCCCCCCCCCCCCHHCCCCHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCC DLRAFDVVFEALSQTYDFVLVTAPPLDQSPLASRLTAKANLVILATLAQHERLIESAHAD CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH LRQNTGCEVLVIGVGGRLMPRLVENAA HHCCCCCEEEEECCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA