BacMap

Definition	Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome.
Accession	NC_010581
Length	4,170,153

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The map label for this gene is vdlC [H]

Identifier: 182677031

GI number: 182677031

Start: 31894

End: 32730

Strand: Direct

Name: vdlC [H]

Synonym: Bind_0029

Alternate gene names: 182677031

Gene position: 31894-32730 (Clockwise)

Preceding gene: 182677030

Following gene: 182677032

Centisome position: 0.76

GC content: 63.44

Gene sequence:

>837_bases
ATGTCCAACAAAGTCGCTCTCGTCACAGGCGCCTCCTCCGGCATCGGAGAGGCCACCGCGCTCAAGCTGAAGGACTTCGG
CTATACTGTTTACGGGGCCGCCCGCCGGGTCGACCGCATGCAACACCTCACCAAGAGCGGCATCCAGATTCTGGCGATGG
ACGTTACCAACGATGCTTCCATGCAGGCTGGCATCGACGTGATCGTTGCCGAGGAGGGCCGGATCGACGTGCTCGTCAAC
AATGCCGGATACGGCTCCTACGGTGCTGTCGAAGACGTGCCGATAGAGGAGGCGCGCGCCCAGTTCGAGGTCAACGTCTT
CGGCGCCGTCCGGCTAATCCAGCTCGCCCTGCCGCACATGCGCGCGCAGCGCTCGGGCACGATCGTCAACATTACCTCGA
TGGGCGGCAAGATCCACACCCCGCTCGGCGCCTGGTATCACGGCACCAAATTCGCGCTGGAGGCAATCAGCGATTGCCTG
CGCATGGAAGTCCAGCCCTTCGGGATCGACGTGGTCGTGATCGAGCCGGGCGGCATCAAGACCGAATGGGCCGGCATCGC
CGCCGACAAGCTGCGCCAGACTTCGGGCCATGGCCCCTATGCCGCGCAGGCCAATGCCATGGCGCAATCCATGGTCGGCG
AGGCGAGCGTAAAGCTTCAGTCGCCGCCGCAGCTCATTGCCGACACGATCGCCAAGGCGGTGACTGCGTCCAAGCCAAAG
ACCCGCTATGCGATCGGTTTCGGGGCAAAGCCGATGATCTTCATGCGCGGCATCCTGTCCGACCGCGCCTTCGACGGCAT
GATGCGGACGGCGACCGGTATCTCGAAGGTGATTTAA

Upstream 100 bases:

>100_bases
GGTGGCGCATCGTTCCCGCTAGGGTTCGTTCATGAGTGCGGCTCATCCCACTGCTGCCGCGCCGAACGGATCACCCGCTT
CAAGAAACGGAACAGCGCAC

Downstream 100 bases:

>100_bases
GAAGGAATGAGCATGGCTCAGGTCGACAGATGCAAGGTGCCGCAGGCTTTCTGGCGCGCCGTCGAGCATATCGGCGTACC
GCCCGTGGCACTGCTAAGAC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSNKVALVTGASSGIGEATALKLKDFGYTVYGAARRVDRMQHLTKSGIQILAMDVTNDASMQAGIDVIVAEEGRIDVLVN
NAGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHMRAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCL
RMEVQPFGIDVVVIEPGGIKTEWAGIAADKLRQTSGHGPYAAQANAMAQSMVGEASVKLQSPPQLIADTIAKAVTASKPK
TRYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKVI

Sequences:

>Translated_278_residues
MSNKVALVTGASSGIGEATALKLKDFGYTVYGAARRVDRMQHLTKSGIQILAMDVTNDASMQAGIDVIVAEEGRIDVLVN
NAGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHMRAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCL
RMEVQPFGIDVVVIEPGGIKTEWAGIAADKLRQTSGHGPYAAQANAMAQSMVGEASVKLQSPPQLIADTIAKAVTASKPK
TRYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKVI
>Mature_277_residues
SNKVALVTGASSGIGEATALKLKDFGYTVYGAARRVDRMQHLTKSGIQILAMDVTNDASMQAGIDVIVAEEGRIDVLVNN
AGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHMRAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCLR
MEVQPFGIDVVVIEPGGIKTEWAGIAADKLRQTSGHGPYAAQANAMAQSMVGEASVKLQSPPQLIADTIAKAVTASKPKT
RYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKVI

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=34.8958333333333, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI223718074, Length=273, Percent_Identity=30.4029304029304, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI7657478, Length=271, Percent_Identity=28.0442804428044, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI44680136, Length=268, Percent_Identity=29.4776119402985, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI44680133, Length=268, Percent_Identity=29.4776119402985, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI17738292, Length=268, Percent_Identity=29.4776119402985, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI19743808, Length=279, Percent_Identity=26.8817204301075, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=32.0388349514563, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI119392083, Length=283, Percent_Identity=27.5618374558304, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI22507405, Length=266, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI150247226, Length=288, Percent_Identity=27.4305555555556, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI50726952, Length=265, Percent_Identity=29.811320754717, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI40548397, Length=293, Percent_Identity=25.938566552901, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI214010158, Length=293, Percent_Identity=25.938566552901, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI214010156, Length=293, Percent_Identity=25.938566552901, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI22758144, Length=293, Percent_Identity=25.938566552901, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4504503, Length=295, Percent_Identity=26.1016949152542, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI157739938, Length=192, Percent_Identity=24.4791666666667, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI109715829, Length=202, Percent_Identity=31.1881188118812, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI59889578, Length=180, Percent_Identity=32.2222222222222, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI4503817, Length=190, Percent_Identity=27.3684210526316, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7705855, Length=200, Percent_Identity=29, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI32483357, Length=191, Percent_Identity=28.7958115183246, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI32455239, Length=194, Percent_Identity=30.4123711340206, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI5031765, Length=194, Percent_Identity=30.4123711340206, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1786701, Length=268, Percent_Identity=32.4626865671642, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787335, Length=193, Percent_Identity=35.2331606217617, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=33.695652173913, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082100, Length=205, Percent_Identity=31.219512195122, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=31.0734463276836, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788459, Length=193, Percent_Identity=32.6424870466321, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787905, Length=146, Percent_Identity=34.2465753424658, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI2367175, Length=193, Percent_Identity=32.6424870466321, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790717, Length=188, Percent_Identity=29.2553191489362, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17557780, Length=303, Percent_Identity=28.3828382838284, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=202, Percent_Identity=33.1683168316832, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=34.0425531914894, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI115534660, Length=270, Percent_Identity=24.8148148148148, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=208, Percent_Identity=33.6538461538462, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71997402, Length=195, Percent_Identity=29.7435897435897, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=33.502538071066, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17570069, Length=200, Percent_Identity=31, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=199, Percent_Identity=33.6683417085427, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=204, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=216, Percent_Identity=32.8703703703704, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=284, Percent_Identity=25, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17507613, Length=286, Percent_Identity=24.8251748251748, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=27.7566539923954, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=207, Percent_Identity=31.8840579710145, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=27.8195488721804, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=199, Percent_Identity=31.6582914572864, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=210, Percent_Identity=29.5238095238095, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=199, Percent_Identity=29.1457286432161, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=201, Percent_Identity=31.3432835820896, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=217, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=198, Percent_Identity=29.7979797979798, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=263, Percent_Identity=24.7148288973384, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=28.4263959390863, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=197, Percent_Identity=28.4263959390863, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=218, Percent_Identity=25.2293577981651, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=204, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=194, Percent_Identity=30.4123711340206, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=223, Percent_Identity=30.0448430493274, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17559552, Length=197, Percent_Identity=26.9035532994924, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=194, Percent_Identity=26.2886597938144, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=34.010152284264, Blast_Score=106, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6322067, Length=198, Percent_Identity=31.8181818181818, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=36.0406091370558, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI23397609, Length=187, Percent_Identity=39.572192513369, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=31.413612565445, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21358495, Length=249, Percent_Identity=29.718875502008, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=35.4838709677419, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI28571526, Length=187, Percent_Identity=32.0855614973262, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24641232, Length=208, Percent_Identity=36.0576923076923, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28571387, Length=245, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=30.4568527918782, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24644339, Length=181, Percent_Identity=29.8342541436464, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24648944, Length=196, Percent_Identity=31.6326530612245, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643142, Length=206, Percent_Identity=29.6116504854369, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24651139, Length=269, Percent_Identity=27.5092936802974, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007234, Length=197, Percent_Identity=34.5177664974619, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24663911, Length=199, Percent_Identity=31.1557788944724, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI19922066, Length=295, Percent_Identity=23.3898305084746, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281364892, Length=176, Percent_Identity=30.1136363636364, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007232, Length=180, Percent_Identity=33.8888888888889, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24640442, Length=225, Percent_Identity=28.8888888888889, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24639444, Length=200, Percent_Identity=30, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24641388, Length=198, Percent_Identity=32.8282828282828, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI21355631, Length=241, Percent_Identity=25.3112033195021, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355319, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281364494, Length=198, Percent_Identity=31.8181818181818, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24584752, Length=238, Percent_Identity=27.3109243697479, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29528; Mature: 29396

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKVALVTGASSGIGEATALKLKDFGYTVYGAARRVDRMQHLTKSGIQILAMDVTNDAS
CCCCEEEEECCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
MQAGIDVIVAEEGRIDVLVNNAGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHM
HHCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHEEEEEHHHHHHHHHHHHHHH
RAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCLRMEVQPFGIDVVVIEPGGIK
HHHCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
TEWAGIAADKLRQTSGHGPYAAQANAMAQSMVGEASVKLQSPPQLIADTIAKAVTASKPK
CHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCC
TRYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKVI
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNKVALVTGASSGIGEATALKLKDFGYTVYGAARRVDRMQHLTKSGIQILAMDVTNDAS
CCCEEEEECCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
MQAGIDVIVAEEGRIDVLVNNAGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHM
HHCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHEEEEEHHHHHHHHHHHHHHH
RAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCLRMEVQPFGIDVVVIEPGGIK
HHHCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
TEWAGIAADKLRQTSGHGPYAAQANAMAQSMVGEASVKLQSPPQLIADTIAKAVTASKPK
CHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCC
TRYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKVI
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]