| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is 182682186
Identifier: 182682186
GI number: 182682186
Start: 1843394
End: 1844299
Strand: Direct
Name: 182682186
Synonym: XfasM23_1665
Alternate gene names: NA
Gene position: 1843394-1844299 (Clockwise)
Preceding gene: 182682184
Following gene: 182682187
Centisome position: 72.7
GC content: 55.96
Gene sequence:
>906_bases ATGCCTCGCCTACCATACTTAACCATGCTGCTGTCGCTTGCTCTTGCTGCTGGCCACGCGTTCGCCGGCCCGGAAGAAGA CCAGCGCGCTCGCAATGCGCTACGCGTGCTGACCGAGCTTCAGAGAATCCCAGAGCAAACCATTCCAGACAAACTGCTAG AAGAAGCACGTGCGATCGTCATCATTCCCGACACGCTCAAAGTGGGCTTCATCATTGGCGGACGCCGTGGCCAAGGCCTC ATGTCGATCAAGACACCACAAAACACATGGTCTCAGCCCGTATTTGTGAAACTGACCGGCGGCAGCATCGGCCTTCAAGC CGGCGTGCAATCTTCCGACGTGGTACTCGTGTTCCGCAATGACCGCAACTTGGATAACATCGTTAACGGAAAATTTACTC TTGGCGCAGATGCCAGCGTGGCCGCAGGTCCCGTTGGGCGTAATGCGTTGGCAGCGACCGATAGCGAGCTAAAGGCCGAG ATCTACTCTTGGTCAACAGCCCGCGGCTTGTTTGCTGGTATCGCTCTAGACGGAGCGGCACTTCAAATCGACGACAGTGC CAACCTTGACGTTTATGGCAAAGGCACCACTCCACGTATGATTTTCGAAGGCCGAACCGCCGAACCTCCCTCCAGCGATG TGATCGCGTTCCGTGATCGCCTGGAGGAAGTCACTTATACAGCACGCAATAACCGTAATAACACCACAAAACAAAGTGGA TGGAACCAGCACACCAGCACACCCAGGCCTGGCACAACAGTGAGAGTGACACCATCGGCCAAGGCAACCCAGGAAGCCAT GACGACCCCGATTCAATCCGAGGCAACCGCCGCAATCCCAGCACAACAAGGCTTCCAGCCAGTCTCCGAAGATGGCATCC ACACCGAATCTCTCGATCACCACTAA
Upstream 100 bases:
>100_bases ACGTAGTCACACTCATTACCGATTCAGCACACGGATAACAGTTTGAGTTGTAATGGGGAGTTGACATTCCGCACTCGAAT CACTCTAGGAGTCTGTTGCC
Downstream 100 bases:
>100_bases ACGTCCATCCTTACAGATGTCGGTTTGTTCAGGTATGCTGATTCTCCCTTTTCCCAGGCAATAGCGAGCAAATCATGGGC AGCTTCAGCCTCCTACACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MPRLPYLTMLLSLALAAGHAFAGPEEDQRARNALRVLTELQRIPEQTIPDKLLEEARAIVIIPDTLKVGFIIGGRRGQGL MSIKTPQNTWSQPVFVKLTGGSIGLQAGVQSSDVVLVFRNDRNLDNIVNGKFTLGADASVAAGPVGRNALAATDSELKAE IYSWSTARGLFAGIALDGAALQIDDSANLDVYGKGTTPRMIFEGRTAEPPSSDVIAFRDRLEEVTYTARNNRNNTTKQSG WNQHTSTPRPGTTVRVTPSAKATQEAMTTPIQSEATAAIPAQQGFQPVSEDGIHTESLDHH
Sequences:
>Translated_301_residues MPRLPYLTMLLSLALAAGHAFAGPEEDQRARNALRVLTELQRIPEQTIPDKLLEEARAIVIIPDTLKVGFIIGGRRGQGL MSIKTPQNTWSQPVFVKLTGGSIGLQAGVQSSDVVLVFRNDRNLDNIVNGKFTLGADASVAAGPVGRNALAATDSELKAE IYSWSTARGLFAGIALDGAALQIDDSANLDVYGKGTTPRMIFEGRTAEPPSSDVIAFRDRLEEVTYTARNNRNNTTKQSG WNQHTSTPRPGTTVRVTPSAKATQEAMTTPIQSEATAAIPAQQGFQPVSEDGIHTESLDHH >Mature_300_residues PRLPYLTMLLSLALAAGHAFAGPEEDQRARNALRVLTELQRIPEQTIPDKLLEEARAIVIIPDTLKVGFIIGGRRGQGLM SIKTPQNTWSQPVFVKLTGGSIGLQAGVQSSDVVLVFRNDRNLDNIVNGKFTLGADASVAAGPVGRNALAATDSELKAEI YSWSTARGLFAGIALDGAALQIDDSANLDVYGKGTTPRMIFEGRTAEPPSSDVIAFRDRLEEVTYTARNNRNNTTKQSGW NQHTSTPRPGTTVRVTPSAKATQEAMTTPIQSEATAAIPAQQGFQPVSEDGIHTESLDHH
Specific function: Unknown
COG id: COG2930
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI227430338, Length=270, Percent_Identity=26.6666666666667, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI227430336, Length=233, Percent_Identity=28.3261802575107, Blast_Score=97, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6321804, Length=193, Percent_Identity=32.6424870466321, Blast_Score=94, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6321137, Length=172, Percent_Identity=33.7209302325581, Blast_Score=88, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32353; Mature: 32222
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRLPYLTMLLSLALAAGHAFAGPEEDQRARNALRVLTELQRIPEQTIPDKLLEEARAIV CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHCCEEE IIPDTLKVGFIIGGRRGQGLMSIKTPQNTWSQPVFVKLTGGSIGLQAGVQSSDVVLVFRN EECCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCEEEEEEC DRNLDNIVNGKFTLGADASVAAGPVGRNALAATDSELKAEIYSWSTARGLFAGIALDGAA CCCCCHHCCCEEEECCCCCCCCCCCCCCCEECCCHHHHHHHHCCHHHHHHEEEEEECCEE LQIDDSANLDVYGKGTTPRMIFEGRTAEPPSSDVIAFRDRLEEVTYTARNNRNNTTKQSG EEECCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC WNQHTSTPRPGTTVRVTPSAKATQEAMTTPIQSEATAAIPAQQGFQPVSEDGIHTESLDH CCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCEECCHHHCCCCCCCCCCCCCCCCC H C >Mature Secondary Structure PRLPYLTMLLSLALAAGHAFAGPEEDQRARNALRVLTELQRIPEQTIPDKLLEEARAIV CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHCCEEE IIPDTLKVGFIIGGRRGQGLMSIKTPQNTWSQPVFVKLTGGSIGLQAGVQSSDVVLVFRN EECCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCEEEEEEC DRNLDNIVNGKFTLGADASVAAGPVGRNALAATDSELKAEIYSWSTARGLFAGIALDGAA CCCCCHHCCCEEEECCCCCCCCCCCCCCCEECCCHHHHHHHHCCHHHHHHEEEEEECCEE LQIDDSANLDVYGKGTTPRMIFEGRTAEPPSSDVIAFRDRLEEVTYTARNNRNNTTKQSG EEECCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC WNQHTSTPRPGTTVRVTPSAKATQEAMTTPIQSEATAAIPAQQGFQPVSEDGIHTESLDH CCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCEECCHHHCCCCCCCCCCCCCCCCC H C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA