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The map label for this gene is rdgC

Identifier: 182682183

GI number: 182682183

Start: 1840188

End: 1841096

Strand: Direct

Name: rdgC

Synonym: XfasM23_1662

Alternate gene names: 182682183

Gene position: 1840188-1841096 (Clockwise)

Preceding gene: 182682182

Following gene: 182682184

Centisome position: 72.57

GC content: 51.38

Gene sequence:

>909_bases
ATGTTCTTTCGTAATCTGACCTTGTTTCGCTTCCCAACGTCACTAGATTTCTCACAGATCGACAGCATACTACCCAACGC
ACGGTTGCGACCGGTTGGCCCATTGGAAATGACATCACGTGGATTTATCTCCCCCTTTGGGCGTGAAGAGCAGGAAGTAC
TCAACCAACGTCAAGGCGACTTTCTGTGGTTGACCGTCGGCAGTGAAGACAAAATCCTGCCTGCTTCAGTCGTTAACGAC
CTGCTGACGCGTAAATGCAGCGAGATTGAGGAAAAGAAAGGCCACCCTCCAGGCGGACGTGAACGCAAACGCATCAAAGA
CGATTTAATCCACGAACTGCTACCACGCGCTTTCGTTAAAAACTCCCGCATTGATGCAATGCTTGATCTACGTTACGGCT
ACGTGGCCGTAGATACCGCAAGCCGCAAAGCCGCTGAAACCGTCATCAGCGAGATCCGCGACTTGCTTGGCAGCTTTCCA
GCACTGCCGCTCAACGCCGAGATTTCAATACGCTCCATGCTGACGAGCTGGATTGCTGGCGAGCCACTGCCCGAACACCT
CAACCTGGGTGATGAGTGCGAAATGAAGGATGCCACCGAAGGCGGTGCAATCATCAAGTGCCAGCACCAAGCGCTACGCT
GCGAAGAAATTGACAAACACTTAGAAGTTGGCAAGCAAGTAAGCAAACTGGCACTCATACTCGACGACCACGTTTCATTT
GTACTCGGTGACGATCTGGTGATCCGCAAACTAAAATTCCTCGACGGCATGTTGGACCAGCTCGAACACAGTGACACCGA
TGGAATCCGTGCTGAACTTGATGCGCGCTTTGCGTTGATGAGTGCCGAAATACGGCGACTGTTTCTCCTATTAGAAGTTC
CGCTGAAGTTGAGCAAAGCAAACAACTAA

Upstream 100 bases:

>100_bases
CCCCATTGCCTAATGCACACGCTTGGCTGGCTGGGGACCTCGCCAACGACACGGCTCCATAGAGCGCCTATTCCCCTTTC
CATTTCCATCCGGACACACA

Downstream 100 bases:

>100_bases
ATGCAGTAACGTCTATGCCCTGACCAACGTTATGCTTGGAGTACTCTTTGCAGACTCATCTTGCCTGATGCCCCCTACAA
ATCAGTTCGAACATGACAAC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MFFRNLTLFRFPTSLDFSQIDSILPNARLRPVGPLEMTSRGFISPFGREEQEVLNQRQGDFLWLTVGSEDKILPASVVND
LLTRKCSEIEEKKGHPPGGRERKRIKDDLIHELLPRAFVKNSRIDAMLDLRYGYVAVDTASRKAAETVISEIRDLLGSFP
ALPLNAEISIRSMLTSWIAGEPLPEHLNLGDECEMKDATEGGAIIKCQHQALRCEEIDKHLEVGKQVSKLALILDDHVSF
VLGDDLVIRKLKFLDGMLDQLEHSDTDGIRAELDARFALMSAEIRRLFLLLEVPLKLSKANN

Sequences:

>Translated_302_residues
MFFRNLTLFRFPTSLDFSQIDSILPNARLRPVGPLEMTSRGFISPFGREEQEVLNQRQGDFLWLTVGSEDKILPASVVND
LLTRKCSEIEEKKGHPPGGRERKRIKDDLIHELLPRAFVKNSRIDAMLDLRYGYVAVDTASRKAAETVISEIRDLLGSFP
ALPLNAEISIRSMLTSWIAGEPLPEHLNLGDECEMKDATEGGAIIKCQHQALRCEEIDKHLEVGKQVSKLALILDDHVSF
VLGDDLVIRKLKFLDGMLDQLEHSDTDGIRAELDARFALMSAEIRRLFLLLEVPLKLSKANN
>Mature_302_residues
MFFRNLTLFRFPTSLDFSQIDSILPNARLRPVGPLEMTSRGFISPFGREEQEVLNQRQGDFLWLTVGSEDKILPASVVND
LLTRKCSEIEEKKGHPPGGRERKRIKDDLIHELLPRAFVKNSRIDAMLDLRYGYVAVDTASRKAAETVISEIRDLLGSFP
ALPLNAEISIRSMLTSWIAGEPLPEHLNLGDECEMKDATEGGAIIKCQHQALRCEEIDKHLEVGKQVSKLALILDDHVSF
VLGDDLVIRKLKFLDGMLDQLEHSDTDGIRAELDARFALMSAEIRRLFLLLEVPLKLSKANN

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=290, Percent_Identity=33.1034482758621, Blast_Score=167, Evalue=9e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_XYLF2 (B2I7H2)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001830343.1
- ProteinModelPortal:   B2I7H2
- SMR:   B2I7H2
- GeneID:   6202799
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_1662
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- ProtClustDB:   PRK00321
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34057; Mature: 34057

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFRNLTLFRFPTSLDFSQIDSILPNARLRPVGPLEMTSRGFISPFGREEQEVLNQRQGD
CCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCC
FLWLTVGSEDKILPASVVNDLLTRKCSEIEEKKGHPPGGRERKRIKDDLIHELLPRAFVK
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
NSRIDAMLDLRYGYVAVDTASRKAAETVISEIRDLLGSFPALPLNAEISIRSMLTSWIAG
CCCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
EPLPEHLNLGDECEMKDATEGGAIIKCQHQALRCEEIDKHLEVGKQVSKLALILDDHVSF
CCCHHHCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VLGDDLVIRKLKFLDGMLDQLEHSDTDGIRAELDARFALMSAEIRRLFLLLEVPLKLSKA
HCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
NN
CC
>Mature Secondary Structure
MFFRNLTLFRFPTSLDFSQIDSILPNARLRPVGPLEMTSRGFISPFGREEQEVLNQRQGD
CCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCC
FLWLTVGSEDKILPASVVNDLLTRKCSEIEEKKGHPPGGRERKRIKDDLIHELLPRAFVK
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
NSRIDAMLDLRYGYVAVDTASRKAAETVISEIRDLLGSFPALPLNAEISIRSMLTSWIAG
CCCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
EPLPEHLNLGDECEMKDATEGGAIIKCQHQALRCEEIDKHLEVGKQVSKLALILDDHVSF
CCCHHHCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VLGDDLVIRKLKFLDGMLDQLEHSDTDGIRAELDARFALMSAEIRRLFLLLEVPLKLSKA
HCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
NN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA