| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is fiu [H]
Identifier: 182682158
GI number: 182682158
Start: 1816080
End: 1818371
Strand: Direct
Name: fiu [H]
Synonym: XfasM23_1637
Alternate gene names: 182682158
Gene position: 1816080-1818371 (Clockwise)
Preceding gene: 182682145
Following gene: 182682159
Centisome position: 71.62
GC content: 53.1
Gene sequence:
>2292_bases ATGCCATTCATTAAGAGTCGCAAACACCTCATCACAGCAACGGCCAGCAGCCGCCACCTCACCGCAGCTGCCCTACTGTC CTCTTTCTCATTCTCATTCTCATTTGTCGCTCAGGCACAAGCGATCCCAATCACCACGCTCGACAAAATTGACGTACAAG CTGAACAACTAAAACGCTATTCCGCAGACAAACCTACCTATGGCAAGTACACCCAACCACTGATCGACACCACCCAGACC ATTAACATCATTGGCAAAACTCTGTTCAACGAACAAGGCGCCACCTCACTCACCGAAGCATTACGCAACAGCCCGGGCGT AGGCACCTTCTACGTCGGCGAAAACGGGACCACCTCAAGAGGTGACAGCGTCTATATGCGCGGCTTCGACAGTTCCAGCA GCATCTATGTCGATGGCATCCGTGACCTTGGCTCAATCACCCGGGACGTCTTCAACCTGGAACAAATAGAAGTCACCAAA GGCCCGTCTGGACCCGACTACGGACGTACTTCGCCGACTGGCGCGATTAACCTGATCACCAAACAGCCCTTTCTACACAA TGCCAACACTGCAAGCATCTCCTATGGCACAGCTTCGCAACGCCGCATCACCAGCGACCTTAATCTCATTGTCAGCCCTG ATTCGGCATTCCGCTTAAACATCATGGGACAAGACATCGGGGTTCCAGGACGCAACAATGTCAAAAACAAACGCTGGGGT CTGGCCCCATCAGCAGCATTTGGCCTGGGAACCAGCACCCGCGTATTCGTCAATTTGCAATATATCAACCAGAACAACAT TCCAGACGGCGGCGTGCTCACCATTGGCTTACCCGGCTACAGCACCCCAGACAGCACACGGACACAAATCAGCGCCGCAC CGCGCGTGGACAGCAAAAACTTCTATGGAACCGGATCAGATTTCGAACATGTGAAATCGTCCATGACAACCGTACGTATT GAGCACGATATCAATGACAAAACGAAACTGCAAAATACCTTGCGCTGGGGTCGCAACGAACAGAGTTACCTACTGACCTC CTACCGCGGCAACGTAGAGAACTTAATAACACCGGACCTAGCCGATCCTTCGACCTGGACAATCAACCGTGAAATACCAA TATTCAAGAATCAAACCAACACGATTTTGACCAACCAAACCAACCTTAATCTGACTCTGAAAACCGGCCCGATCGAACAC AACATCGCCACTGGTATGGAACTGACCCGTGAACGGATGCAAGGCTACGGTATCAGCAGCAGCGGTCGCTGGCCGGCAGC CAACCTGTACCACCCGGACCCGGACGTCAGCGGGCTGCACTGGGCAGCCAATGGCGCCTATGCCAACGGACGTACTGATA CCACCGCGTTTTACCTGTTCGATACACTTAAGCTCAATCAGCATTGGCAGCTCAACAGCGGCCTGCGCTGGGACCGCTAT AACACCGACTATGCGGCACTGCTCTGCGACCCAGTACGTAGCCGCATCTACTGCAACACAACACCTATCACACTCAATCG GTTCAATGGCAACACGTCCGGGACGCTGTTCGGCTGGAAAACGGGGATATTATTTAAACCCACCAAACACAGCAGCCTCT ACATCAACTACGCCGTGTCCCAACAACCACCCGGAGGTTCCTCACTGGATCTCAGTGCCAAACCCCAGGATGCCAATAAC CCGAAGTACCAACCACAAACGGCACGCACCGCAGAAGCAGGTGTGAAGTGGAACTCGTCTCAAGAAGGCTTGCAACTGAC CGCCGCCATATACAACACCCAGGTCAAAAACGACATCGTGCAAGACCCCATCGACCTACAGTATTACCAAAATGGTAAGA AACGCGTGCGCGGTGTTGAACTCAGCGCAGTCGGCAAAATCACCAATGCCTGGTCAATATCGGCAGGGTTCACTACGATG GACGCCAAAGTCAAACAGGGACCCTCGGTCTCGGCCGACGGTTCACCCACACTTGCTTACACGCCCAATCAAGCATTCAC CGCCTGGAGCACATACACCCTCCCATTTGGCCTGACCATCGGCGGTGGCGCACGCTACGTCGGAGAAATGAAACGCGACA GTAAAACCGCGATCGGGACGCCAACCTATATCAAGAGCTACTGGGCCCTAGACATGGTACTTAGCTACCGCCTGAACGAA CACCTGGATCTACGGCTGAACAGCTACAACTTGTTAAATAAAGACTACGTCGCAGCGATCAACAAGAGTGGCTATCGGTA TGCACCAGGGATCCCACGTGCGTTTCTACTGACAGCAAACTTCCACTTCTAA
Upstream 100 bases:
>100_bases CCCGTCGGCCCCAGCTTCCGGGTTTCCTGTCTACAGATAAATGATCGTCATGTGCTGCCACAACTCAACCAGCACCGATC ATGGCTCACTGAGACCTCCA
Downstream 100 bases:
>100_bases GCGACACGAGCACGGCATGAACACCTAGCTCAAAAAAACTCACAATGCTTTTACACATCCCAACCATCCTCAGTCGCACA CATGCCACCTCAATGCAGGA
Product: catecholate siderophore receptor Fiu
Products: NA
Alternate protein names: Ferric iron uptake protein; TonB-dependent receptor fiu [H]
Number of amino acids: Translated: 763; Mature: 762
Protein sequence:
>763_residues MPFIKSRKHLITATASSRHLTAAALLSSFSFSFSFVAQAQAIPITTLDKIDVQAEQLKRYSADKPTYGKYTQPLIDTTQT INIIGKTLFNEQGATSLTEALRNSPGVGTFYVGENGTTSRGDSVYMRGFDSSSSIYVDGIRDLGSITRDVFNLEQIEVTK GPSGPDYGRTSPTGAINLITKQPFLHNANTASISYGTASQRRITSDLNLIVSPDSAFRLNIMGQDIGVPGRNNVKNKRWG LAPSAAFGLGTSTRVFVNLQYINQNNIPDGGVLTIGLPGYSTPDSTRTQISAAPRVDSKNFYGTGSDFEHVKSSMTTVRI EHDINDKTKLQNTLRWGRNEQSYLLTSYRGNVENLITPDLADPSTWTINREIPIFKNQTNTILTNQTNLNLTLKTGPIEH NIATGMELTRERMQGYGISSSGRWPAANLYHPDPDVSGLHWAANGAYANGRTDTTAFYLFDTLKLNQHWQLNSGLRWDRY NTDYAALLCDPVRSRIYCNTTPITLNRFNGNTSGTLFGWKTGILFKPTKHSSLYINYAVSQQPPGGSSLDLSAKPQDANN PKYQPQTARTAEAGVKWNSSQEGLQLTAAIYNTQVKNDIVQDPIDLQYYQNGKKRVRGVELSAVGKITNAWSISAGFTTM DAKVKQGPSVSADGSPTLAYTPNQAFTAWSTYTLPFGLTIGGGARYVGEMKRDSKTAIGTPTYIKSYWALDMVLSYRLNE HLDLRLNSYNLLNKDYVAAINKSGYRYAPGIPRAFLLTANFHF
Sequences:
>Translated_763_residues MPFIKSRKHLITATASSRHLTAAALLSSFSFSFSFVAQAQAIPITTLDKIDVQAEQLKRYSADKPTYGKYTQPLIDTTQT INIIGKTLFNEQGATSLTEALRNSPGVGTFYVGENGTTSRGDSVYMRGFDSSSSIYVDGIRDLGSITRDVFNLEQIEVTK GPSGPDYGRTSPTGAINLITKQPFLHNANTASISYGTASQRRITSDLNLIVSPDSAFRLNIMGQDIGVPGRNNVKNKRWG LAPSAAFGLGTSTRVFVNLQYINQNNIPDGGVLTIGLPGYSTPDSTRTQISAAPRVDSKNFYGTGSDFEHVKSSMTTVRI EHDINDKTKLQNTLRWGRNEQSYLLTSYRGNVENLITPDLADPSTWTINREIPIFKNQTNTILTNQTNLNLTLKTGPIEH NIATGMELTRERMQGYGISSSGRWPAANLYHPDPDVSGLHWAANGAYANGRTDTTAFYLFDTLKLNQHWQLNSGLRWDRY NTDYAALLCDPVRSRIYCNTTPITLNRFNGNTSGTLFGWKTGILFKPTKHSSLYINYAVSQQPPGGSSLDLSAKPQDANN PKYQPQTARTAEAGVKWNSSQEGLQLTAAIYNTQVKNDIVQDPIDLQYYQNGKKRVRGVELSAVGKITNAWSISAGFTTM DAKVKQGPSVSADGSPTLAYTPNQAFTAWSTYTLPFGLTIGGGARYVGEMKRDSKTAIGTPTYIKSYWALDMVLSYRLNE HLDLRLNSYNLLNKDYVAAINKSGYRYAPGIPRAFLLTANFHF >Mature_762_residues PFIKSRKHLITATASSRHLTAAALLSSFSFSFSFVAQAQAIPITTLDKIDVQAEQLKRYSADKPTYGKYTQPLIDTTQTI NIIGKTLFNEQGATSLTEALRNSPGVGTFYVGENGTTSRGDSVYMRGFDSSSSIYVDGIRDLGSITRDVFNLEQIEVTKG PSGPDYGRTSPTGAINLITKQPFLHNANTASISYGTASQRRITSDLNLIVSPDSAFRLNIMGQDIGVPGRNNVKNKRWGL APSAAFGLGTSTRVFVNLQYINQNNIPDGGVLTIGLPGYSTPDSTRTQISAAPRVDSKNFYGTGSDFEHVKSSMTTVRIE HDINDKTKLQNTLRWGRNEQSYLLTSYRGNVENLITPDLADPSTWTINREIPIFKNQTNTILTNQTNLNLTLKTGPIEHN IATGMELTRERMQGYGISSSGRWPAANLYHPDPDVSGLHWAANGAYANGRTDTTAFYLFDTLKLNQHWQLNSGLRWDRYN TDYAALLCDPVRSRIYCNTTPITLNRFNGNTSGTLFGWKTGILFKPTKHSSLYINYAVSQQPPGGSSLDLSAKPQDANNP KYQPQTARTAEAGVKWNSSQEGLQLTAAIYNTQVKNDIVQDPIDLQYYQNGKKRVRGVELSAVGKITNAWSISAGFTTMD AKVKQGPSVSADGSPTLAYTPNQAFTAWSTYTLPFGLTIGGGARYVGEMKRDSKTAIGTPTYIKSYWALDMVLSYRLNEH LDLRLNSYNLLNKDYVAAINKSGYRYAPGIPRAFLLTANFHF
Specific function: Involved in the active transport across the outer membrane of iron complexed with catecholate siderophores such as dihydroxybenzoylserine and dihydroxybenzoate. It derives its energy for transport by interacting with the trans-periplasmic membrane protein
COG id: COG4774
COG function: function code P; Outer membrane receptor for monomeric catechols
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=758, Percent_Identity=46.1741424802111, Blast_Score=665, Evalue=0.0, Organism=Escherichia coli, GI1786344, Length=729, Percent_Identity=23.3196159122085, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1787344, Length=251, Percent_Identity=26.2948207171315, Blast_Score=63, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 84064; Mature: 83933
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFIKSRKHLITATASSRHLTAAALLSSFSFSFSFVAQAQAIPITTLDKIDVQAEQLKRY CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCHHHHHHH SADKPTYGKYTQPLIDTTQTINIIGKTLFNEQGATSLTEALRNSPGVGTFYVGENGTTSR CCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCCC GDSVYMRGFDSSSSIYVDGIRDLGSITRDVFNLEQIEVTKGPSGPDYGRTSPTGAINLIT CCEEEEEECCCCCCEEEECHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEEE KQPFLHNANTASISYGTASQRRITSDLNLIVSPDSAFRLNIMGQDIGVPGRNNVKNKRWG CCCCCCCCCCCEEEECCCCCCEECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC LAPSAAFGLGTSTRVFVNLQYINQNNIPDGGVLTIGLPGYSTPDSTRTQISAAPRVDSKN CCCCHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCC FYGTGSDFEHVKSSMTTVRIEHDINDKTKLQNTLRWGRNEQSYLLTSYRGNVENLITPDL CCCCCCCHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC ADPSTWTINREIPIFKNQTNTILTNQTNLNLTLKTGPIEHNIATGMELTRERMQGYGISS CCCCEEEEECCCCEEECCCCEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC SGRWPAANLYHPDPDVSGLHWAANGAYANGRTDTTAFYLFDTLKLNQHWQLNSGLRWDRY CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCEECCC NTDYAALLCDPVRSRIYCNTTPITLNRFNGNTSGTLFGWKTGILFKPTKHSSLYINYAVS CCCEEEEEEECHHCCEEECCCCEEEEECCCCCCCEEEEEECCEEECCCCCCEEEEEEEEC QQPPGGSSLDLSAKPQDANNPKYQPQTARTAEAGVKWNSSQEGLQLTAAIYNTQVKNDIV CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCCEECCCCCCEEEEEEEHHHHHHHHHH QDPIDLQYYQNGKKRVRGVELSAVGKITNAWSISAGFTTMDAKVKQGPSVSADGSPTLAY CCCCCCHHHHCCHHHEEEEEEEECCCCCCCEEEECCCEEECCHHCCCCCCCCCCCCEEEE TPNQAFTAWSTYTLPFGLTIGGGARYVGEMKRDSKTAIGTPTYIKSYWALDMVLSYRLNE CCCCCEEEEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC HLDLRLNSYNLLNKDYVAAINKSGYRYAPGIPRAFLLTANFHF CEEEEECCEECCCCCEEEEECCCCCEECCCCCEEEEEEEECCC >Mature Secondary Structure PFIKSRKHLITATASSRHLTAAALLSSFSFSFSFVAQAQAIPITTLDKIDVQAEQLKRY CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCHHHHHHH SADKPTYGKYTQPLIDTTQTINIIGKTLFNEQGATSLTEALRNSPGVGTFYVGENGTTSR CCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCCC GDSVYMRGFDSSSSIYVDGIRDLGSITRDVFNLEQIEVTKGPSGPDYGRTSPTGAINLIT CCEEEEEECCCCCCEEEECHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEEE KQPFLHNANTASISYGTASQRRITSDLNLIVSPDSAFRLNIMGQDIGVPGRNNVKNKRWG CCCCCCCCCCCEEEECCCCCCEECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC LAPSAAFGLGTSTRVFVNLQYINQNNIPDGGVLTIGLPGYSTPDSTRTQISAAPRVDSKN CCCCHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCC FYGTGSDFEHVKSSMTTVRIEHDINDKTKLQNTLRWGRNEQSYLLTSYRGNVENLITPDL CCCCCCCHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCC ADPSTWTINREIPIFKNQTNTILTNQTNLNLTLKTGPIEHNIATGMELTRERMQGYGISS CCCCEEEEECCCCEEECCCCEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC SGRWPAANLYHPDPDVSGLHWAANGAYANGRTDTTAFYLFDTLKLNQHWQLNSGLRWDRY CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCEECCC NTDYAALLCDPVRSRIYCNTTPITLNRFNGNTSGTLFGWKTGILFKPTKHSSLYINYAVS CCCEEEEEEECHHCCEEECCCCEEEEECCCCCCCEEEEEECCEEECCCCCCEEEEEEEEC QQPPGGSSLDLSAKPQDANNPKYQPQTARTAEAGVKWNSSQEGLQLTAAIYNTQVKNDIV CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCCEECCCCCCEEEEEEEHHHHHHHHHH QDPIDLQYYQNGKKRVRGVELSAVGKITNAWSISAGFTTMDAKVKQGPSVSADGSPTLAY CCCCCCHHHHCCHHHEEEEEEEECCCCCCCEEEECCCEEECCHHCCCCCCCCCCCCEEEE TPNQAFTAWSTYTLPFGLTIGGGARYVGEMKRDSKTAIGTPTYIKSYWALDMVLSYRLNE CCCCCEEEEEEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC HLDLRLNSYNLLNKDYVAAINKSGYRYAPGIPRAFLLTANFHF CEEEEECCEECCCCCEEEEECCCCCEECCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]