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The map label for this gene is traD [H]

Identifier: 182681551

GI number: 182681551

Start: 1165397

End: 1165753

Strand: Reverse

Name: traD [H]

Synonym: XfasM23_1006

Alternate gene names: 182681551

Gene position: 1165753-1165397 (Counterclockwise)

Preceding gene: 182681552

Following gene: 182681549

Centisome position: 45.97

GC content: 47.06

Gene sequence:

>357_bases
ATGAACATTCCAAAGATTTATAACGAAAAAACTGGTTCTGATGACGCGATGAACGTAACGGACAATTTCCGTGAAAAGTT
GATCAATGCCGAGACTCCAGGCTTTCAGGCCGAATGTGATCCGAACGAGGCAGATTGCGCAGGTGTGTTTGTAGAGGACG
CATTGAGCGAGGAAGATGCGCTTGATACTGCTATTGATCTAAACGACGCACAAAGTGGTGATGTGCCGGTGTTCATTGAG
TACGGCGAAGGTCTTGATGTTCCCAAGAACTTCACCAGAGTCAATGCGTATGAGCTGCTAGGCAAACGGCAAGGAGAATC
CGTCAAAGATGCCTTGGAGCGTTCAAATCCTCAATGA

Upstream 100 bases:

>100_bases
CAATTTCTGATCGTGCAGTGGCTATCTCACTTACTCGCAAACGTATCCCGACGCCAATGGAAGACCCTAACTACACCATC
CAACGTAAGGAGACATGAGT

Downstream 100 bases:

>100_bases
CAATCATGGCGTGGGATTTTTTGCTGATAGTCGTTGTAACCTTAGTGAAGGTAGTCCTTACGGACGGATATTTGCGGTTT
CTGTCTAGATTTAAAACTGT

Product: conjugal transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEEDALDTAIDLNDAQSGDVPVFIE
YGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ

Sequences:

>Translated_118_residues
MNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEEDALDTAIDLNDAQSGDVPVFIE
YGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ
>Mature_118_residues
MNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEEDALDTAIDLNDAQSGDVPVFIE
YGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To plasmid IncP-alpha RP4 traD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016703 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12960; Mature: 12960

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEEDA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCH
LDTAIDLNDAQSGDVPVFIEYGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ
HHHEECCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MNIPKIYNEKTGSDDAMNVTDNFREKLINAETPGFQAECDPNEADCAGVFVEDALSEEDA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCH
LDTAIDLNDAQSGDVPVFIEYGEGLDVPKNFTRVNAYELLGKRQGESVKDALERSNPQ
HHHEECCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]