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The map label for this gene is xpsD [H]

Identifier: 182681332

GI number: 182681332

Start: 917750

End: 920077

Strand: Direct

Name: xpsD [H]

Synonym: XfasM23_0779

Alternate gene names: 182681332

Gene position: 917750-920077 (Clockwise)

Preceding gene: 182681331

Following gene: 182681333

Centisome position: 36.19

GC content: 52.66

Gene sequence:

>2328_bases
ATGATTTCGCGTCTTTTAACTGTTTCGATAGTCACTGCCCTTTTGGGTTCTTGTGTTACCCCACCATCGCCGATGATTAA
GCGGAATACTCTTCTGCATAAACATCCTGCTACTGCAGACATACCGACGACACAGCTCCCTGACGCTGTGGGGACGGCCA
CTGTGCCGCTGCCTGACACTACGGAGACGCCGAATGCGCTGCTTTCTGATGCTGGTGGCCCGCTCCCGGTGATTCGTCGT
GGTAATGGGGAAGTGATTAATCAGACTGTTGCTGCAACTCCACCGCCATCAATGGGTGTGGCTGGAAAAGGTAGCGCTAT
CTTTAACTTCGAAGGAGAGTCGTTGCAGGCTGTGGTCAAAGCCATTCTTGGCGACATGCTAGGGCAAAACTATTTCATTG
CATCGGGTGTGCAGGGCACGGTGACTCTTTCCACACCTAAGCCTGTCTCGTCGGCACAGGCGCTGAGTCTCTTGGAGATG
GTATTGGGTTGGAACAACGCACGGATGATTTATAACAATGGACGTTACAGCATTGTCCAGGCCGACCAGGCGCTAGCTGG
TACGGTTGCGCCGAGTACTGCACCGTCGGCGGTTGCCCGTGGCTTTGAAGTCCGTGTGGTACCACTGAAGTACATCTCGG
CGAGCGAGATGAAAAAAGTGCTTGATCCATACGCACGTCCTAATGCGATTGTCAGCATTGATACAACGCGTAACCTGATT
ACCCTTGCGGGTACCCGTGTTGAGCTAGAGAACTATCTGCGCACTGTTCAAATTTTCGATGTTGATTGGTTGTCTGGTAT
GTCGGTGGGTGTGTTCCCAATTCAATCAGGCAAGGCGGATAAAGTTGCTGCCGATTTGGAAAAAGTGTTTGGCGAGAGCG
GAAAAACGCCTAGCGCCGGTATGTTCCGTTTTATGCCTCTGGAGAGTGCTAACGCTGTTTTGGTGATTACCCCACAGGCT
AGTTATCTGGATCAGATTCAGAAATGGTTGGATAGTGTCGACAGTGTTGGAGGTGCTTTGAGTTTGTTCTCTTACGCGCT
GAAGTACATCAAGGCCAATGATTTAGCTAATCGTCTGGCGGAAGTATTTGGGGTCGGTGCTAGGCGTGAAGATAGTAATG
TGTCGCTGGCTCCAGGCGCGCAACTTGGCGTCTTGGGAAGTGGCGGCAGTGGCGATAACCTGCCAAGTGCTGGTGGTGGC
GGTAGCCTTTCTGCTGTTCCCAGTAACGGAGGGGCGGATAACACGAGCAGTGCGAATGGTGGTTTGGGGGGCAGTACGCT
CCAGTTGTCACCACGCACCCAAGGCAATGGCAGTGTGACTCTTCATGTGCAGGGCGATACCGTCGGTGTGTCGGCGGTGG
AGGAAATTAATACCTTGCTGGTCCGTGCGACTCCCCAAGCGTGGAAATCGATACGTGATGTGATTGAGAAGCTTGATGTG
ATGCCGATGCAGGTACATATCGAAGCTCAGGTCGCTGAAGTCAGCCTCACCAACCAGCTCAGCTATGGTGTGAATTGGTT
TTTCCAGAATTCTGTAAATGCTGCTGCTGATGCGGCGGATAATGGCGCTTCCAACGGGACTGGCATTGGCCTAGGTGCGG
GCCTGCCTAGTGCCGCTGCGCGTTCGGGGTGGAAGAGCATTGCCGGTAAGGTCACCAGCAATGGGTTGGCTTGGACGTTC
CTTGGAAAGAACGCCGCAGCGATTATCAATGCATTGGACCAAGTCACCCAGGTCCGTTTGCTACAGACGCCGTCAGTATT
CGTGCGTAACAACGCCGAGGCCACGCTCAACGTGGGTGCGCGTATTCCAATCAATTCCACCTCAATTAACACCGGTCTGG
GCAGTAACAGTACCTACTCCTCAGTGCAGTACATTGATACTGGCGTCATTTTGAAAGTGCGTCCGCGCGTGACTAAGGAC
GGAATGGTGTTTTTGGACATCGTACAGGAGGTCAGCACCCCTGGTTCACTGCCAGCGGCATGTAGCTCTGCTAGTTCGAC
GTTGGTTAACAGTGCCGCGTGCAATGTCCAGATCAACACACGCAGGATTAAGACGGAGGCCGCGGTGCAGAGTGGCGATA
CGATCATGCTTGCTGGCCTGATTGACAGTAATAGCGGTAAAGGCAGTAACGGGGTCCCGTTCCTGAGTAAGGTGCCGATA
GTCGGTGGGTTGTTTGGTACGAAGGCGCAGAATAATAATCGCCGGGAAATCATTGTGTTACTGACCCCAGAGATTGTGCG
TAACCCTCAGGAGGCGCGCAATCTTACTGATGAATACAGTCAAAAATTCAACGCAATGGAGCCATTACCAGGATTGAATA
CAAAATGA

Upstream 100 bases:

>100_bases
AGCGCATTGAAGCCCGTCGGCGTCAACTTCAGCAACAACAAGAGCAACAAAAGTAACAGGATAGAGGTTCTTTCTGACCA
GCACCAATAAGAGTGAATGC

Downstream 100 bases:

>100_bases
GCTTGATGTTGGGAAACTGCTGCTGGTGCCATGTTTCCCAAGAATTTTTAATGCTAATTAATTAAGCCATTTACTCATGT
GGCATGAGTGTATGGCTTGG

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 775; Mature: 775

Protein sequence:

>775_residues
MISRLLTVSIVTALLGSCVTPPSPMIKRNTLLHKHPATADIPTTQLPDAVGTATVPLPDTTETPNALLSDAGGPLPVIRR
GNGEVINQTVAATPPPSMGVAGKGSAIFNFEGESLQAVVKAILGDMLGQNYFIASGVQGTVTLSTPKPVSSAQALSLLEM
VLGWNNARMIYNNGRYSIVQADQALAGTVAPSTAPSAVARGFEVRVVPLKYISASEMKKVLDPYARPNAIVSIDTTRNLI
TLAGTRVELENYLRTVQIFDVDWLSGMSVGVFPIQSGKADKVAADLEKVFGESGKTPSAGMFRFMPLESANAVLVITPQA
SYLDQIQKWLDSVDSVGGALSLFSYALKYIKANDLANRLAEVFGVGARREDSNVSLAPGAQLGVLGSGGSGDNLPSAGGG
GSLSAVPSNGGADNTSSANGGLGGSTLQLSPRTQGNGSVTLHVQGDTVGVSAVEEINTLLVRATPQAWKSIRDVIEKLDV
MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAARSGWKSIAGKVTSNGLAWTF
LGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKD
GMVFLDIVQEVSTPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPI
VGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLTDEYSQKFNAMEPLPGLNTK

Sequences:

>Translated_775_residues
MISRLLTVSIVTALLGSCVTPPSPMIKRNTLLHKHPATADIPTTQLPDAVGTATVPLPDTTETPNALLSDAGGPLPVIRR
GNGEVINQTVAATPPPSMGVAGKGSAIFNFEGESLQAVVKAILGDMLGQNYFIASGVQGTVTLSTPKPVSSAQALSLLEM
VLGWNNARMIYNNGRYSIVQADQALAGTVAPSTAPSAVARGFEVRVVPLKYISASEMKKVLDPYARPNAIVSIDTTRNLI
TLAGTRVELENYLRTVQIFDVDWLSGMSVGVFPIQSGKADKVAADLEKVFGESGKTPSAGMFRFMPLESANAVLVITPQA
SYLDQIQKWLDSVDSVGGALSLFSYALKYIKANDLANRLAEVFGVGARREDSNVSLAPGAQLGVLGSGGSGDNLPSAGGG
GSLSAVPSNGGADNTSSANGGLGGSTLQLSPRTQGNGSVTLHVQGDTVGVSAVEEINTLLVRATPQAWKSIRDVIEKLDV
MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAARSGWKSIAGKVTSNGLAWTF
LGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKD
GMVFLDIVQEVSTPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPI
VGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLTDEYSQKFNAMEPLPGLNTK
>Mature_775_residues
MISRLLTVSIVTALLGSCVTPPSPMIKRNTLLHKHPATADIPTTQLPDAVGTATVPLPDTTETPNALLSDAGGPLPVIRR
GNGEVINQTVAATPPPSMGVAGKGSAIFNFEGESLQAVVKAILGDMLGQNYFIASGVQGTVTLSTPKPVSSAQALSLLEM
VLGWNNARMIYNNGRYSIVQADQALAGTVAPSTAPSAVARGFEVRVVPLKYISASEMKKVLDPYARPNAIVSIDTTRNLI
TLAGTRVELENYLRTVQIFDVDWLSGMSVGVFPIQSGKADKVAADLEKVFGESGKTPSAGMFRFMPLESANAVLVITPQA
SYLDQIQKWLDSVDSVGGALSLFSYALKYIKANDLANRLAEVFGVGARREDSNVSLAPGAQLGVLGSGGSGDNLPSAGGG
GSLSAVPSNGGADNTSSANGGLGGSTLQLSPRTQGNGSVTLHVQGDTVGVSAVEEINTLLVRATPQAWKSIRDVIEKLDV
MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAARSGWKSIAGKVTSNGLAWTF
LGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKD
GMVFLDIVQEVSTPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPI
VGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLTDEYSQKFNAMEPLPGLNTK

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=330, Percent_Identity=28.4848484848485, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1789793, Length=290, Percent_Identity=23.7931034482759, Blast_Score=83, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 80706; Mature: 80706

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISRLLTVSIVTALLGSCVTPPSPMIKRNTLLHKHPATADIPTTQLPDAVGTATVPLPDT
CCCHHHHHHHHHHHHHHCCCCCCCCHHCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCC
TETPNALLSDAGGPLPVIRRGNGEVINQTVAATPPPSMGVAGKGSAIFNFEGESLQAVVK
CCCCHHHHHCCCCCCCEEECCCCCEEECEEECCCCCCCCCCCCCCEEEEECCHHHHHHHH
AILGDMLGQNYFIASGVQGTVTLSTPKPVSSAQALSLLEMVLGWNNARMIYNNGRYSIVQ
HHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEE
ADQALAGTVAPSTAPSAVARGFEVRVVPLKYISASEMKKVLDPYARPNAIVSIDTTRNLI
CCCHHHCCCCCCCCCHHHHCCCEEEEEEEECCCHHHHHHHHCCCCCCCEEEEEECCCCEE
TLAGTRVELENYLRTVQIFDVDWLSGMSVGVFPIQSGKADKVAADLEKVFGESGKTPSAG
EEECCEEEHHHHHEEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCC
MFRFMPLESANAVLVITPQASYLDQIQKWLDSVDSVGGALSLFSYALKYIKANDLANRLA
CEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
EVFGVGARREDSNVSLAPGAQLGVLGSGGSGDNLPSAGGGGSLSAVPSNGGADNTSSANG
HHHCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
GLGGSTLQLSPRTQGNGSVTLHVQGDTVGVSAVEEINTLLVRATPQAWKSIRDVIEKLDV
CCCCCEEEECCCCCCCCEEEEEECCCEECHHHHHHHHEEEEEECHHHHHHHHHHHHHHCC
MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAA
CEEEEEEEEEEEEEEEHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCEEECCCCCHHHH
RSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGA
HHHHHHHHCHHCCCCEEEEEECCCHHHHHHHHHHHHHEEEECCCCEEEECCCCEEEEECE
RIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAA
ECCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHH
CSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPI
HCCHHHHHHHCEEEEEEEECEEEEHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHCCCE
VGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLTDEYSQKFNAMEPLPGLNTK
EECCCCCCCCCCCCEEEEEEECHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MISRLLTVSIVTALLGSCVTPPSPMIKRNTLLHKHPATADIPTTQLPDAVGTATVPLPDT
CCCHHHHHHHHHHHHHHCCCCCCCCHHCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCC
TETPNALLSDAGGPLPVIRRGNGEVINQTVAATPPPSMGVAGKGSAIFNFEGESLQAVVK
CCCCHHHHHCCCCCCCEEECCCCCEEECEEECCCCCCCCCCCCCCEEEEECCHHHHHHHH
AILGDMLGQNYFIASGVQGTVTLSTPKPVSSAQALSLLEMVLGWNNARMIYNNGRYSIVQ
HHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEE
ADQALAGTVAPSTAPSAVARGFEVRVVPLKYISASEMKKVLDPYARPNAIVSIDTTRNLI
CCCHHHCCCCCCCCCHHHHCCCEEEEEEEECCCHHHHHHHHCCCCCCCEEEEEECCCCEE
TLAGTRVELENYLRTVQIFDVDWLSGMSVGVFPIQSGKADKVAADLEKVFGESGKTPSAG
EEECCEEEHHHHHEEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCC
MFRFMPLESANAVLVITPQASYLDQIQKWLDSVDSVGGALSLFSYALKYIKANDLANRLA
CEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
EVFGVGARREDSNVSLAPGAQLGVLGSGGSGDNLPSAGGGGSLSAVPSNGGADNTSSANG
HHHCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
GLGGSTLQLSPRTQGNGSVTLHVQGDTVGVSAVEEINTLLVRATPQAWKSIRDVIEKLDV
CCCCCEEEECCCCCCCCEEEEEECCCEECHHHHHHHHEEEEEECHHHHHHHHHHHHHHCC
MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLGAGLPSAAA
CEEEEEEEEEEEEEEEHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCEEECCCCCHHHH
RSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNAEATLNVGA
HHHHHHHHCHHCCCCEEEEEECCCHHHHHHHHHHHHHEEEECCCCEEEECCCCEEEEECE
RIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPGSLPAA
ECCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHH
CSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPI
HCCHHHHHHHCEEEEEEEECEEEEHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHCCCE
VGGLFGTKAQNNNRREIIVLLTPEIVRNPQEARNLTDEYSQKFNAMEPLPGLNTK
EECCCCCCCCCCCCEEEEEEECHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]