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The map label for this gene is ybeY [C]

Identifier: 197294661

GI number: 197294661

Start: 614080

End: 614514

Strand: Reverse

Name: ybeY [C]

Synonym: PAa_0617

Alternate gene names: 197294661

Gene position: 614514-614080 (Counterclockwise)

Preceding gene: 197294662

Following gene: 197294660

Centisome position: 69.83

GC content: 25.52

Gene sequence:

>435_bases
ATGAAAATCCAAATCCATAATCACACTTCTTTTAAGATTGATTCTTATCAACAATTATTAATTCAATTATTTAGTCAAAT
CAAAGAAAACAATCAAATGCATCTTGTGTTTGTTACCAAAGAAAAAATCAAACAACTTAATACTTTTTTTCGAAAAAAAA
ATTTTGTTACAGATGTTTTATCATTTCCCAATGAATTTTCTTTTAATCCTAATTTAAAAGATGATTCTTTAGGAGATGTT
TTTATTTGTTTTGAGCAAGCCCAACTCCAAGCACAAAAATTATTACACAGTTTAGAGAGAGAAATTGCGTTCTTGGTGGT
TCATGGCTTTTTACACCTCAAAGGTTATCAACATAATAACGAAGAAGAGTTAGAAAAAATGATTCATTTGCAAGAAAAAA
TTTTAAAAAAAATTAACTTAGAACGAAAAAAATAA

Upstream 100 bases:

>100_bases
AAAAAAGTTGCTTTTTTCCTTTTTTTAGTCTTTTTTCTTCTTTAATTATTTCAGAATAAGTGATCGTTTTGCAACCAAAT
CCAAACAAGGAAATAAGTTG

Downstream 100 bases:

>100_bases
TCAAAGAGGTTTTATATGAGTTTTAAATCCGGTTTCATTGCTATTGTCGGCCGTCCTAATGTTGGTAAATCAACTCTTTT
AAATGTTTTGACTAACCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKIQIHNHTSFKIDSYQQLLIQLFSQIKENNQMHLVFVTKEKIKQLNTFFRKKNFVTDVLSFPNEFSFNPNLKDDSLGDV
FICFEQAQLQAQKLLHSLEREIAFLVVHGFLHLKGYQHNNEEELEKMIHLQEKILKKINLERKK

Sequences:

>Translated_144_residues
MKIQIHNHTSFKIDSYQQLLIQLFSQIKENNQMHLVFVTKEKIKQLNTFFRKKNFVTDVLSFPNEFSFNPNLKDDSLGDV
FICFEQAQLQAQKLLHSLEREIAFLVVHGFLHLKGYQHNNEEELEKMIHLQEKILKKINLERKK
>Mature_144_residues
MKIQIHNHTSFKIDSYQQLLIQLFSQIKENNQMHLVFVTKEKIKQLNTFFRKKNFVTDVLSFPNEFSFNPNLKDDSLGDV
FICFEQAQLQAQKLLHSLEREIAFLVVHGFLHLKGYQHNNEEELEKMIHLQEKILKKINLERKK

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=103, Percent_Identity=35.9223300970874, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PHYAS (B1VAH8)

Other databases:

- EMBL:   AM422018
- RefSeq:   YP_001799202.1
- ProteinModelPortal:   B1VAH8
- SMR:   B1VAH8
- GeneID:   6799685
- GenomeReviews:   AM422018_GR
- HOGENOM:   HBG734136
- OMA:   HGFLHLK
- ProtClustDB:   CLSK343815
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17226; Mature: 17226

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIQIHNHTSFKIDSYQQLLIQLFSQIKENNQMHLVFVTKEKIKQLNTFFRKKNFVTDVL
CEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHH
SFPNEFSFNPNLKDDSLGDVFICFEQAQLQAQKLLHSLEREIAFLVVHGFLHLKGYQHNN
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EEELEKMIHLQEKILKKINLERKK
HHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKIQIHNHTSFKIDSYQQLLIQLFSQIKENNQMHLVFVTKEKIKQLNTFFRKKNFVTDVL
CEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHH
SFPNEFSFNPNLKDDSLGDVFICFEQAQLQAQKLLHSLEREIAFLVVHGFLHLKGYQHNN
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EEELEKMIHLQEKILKKINLERKK
HHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA