| Definition | Candidatus Phytoplasma australiense, complete genome. |
|---|---|
| Accession | NC_010544 |
| Length | 879,959 |
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The map label for this gene is potA [H]
Identifier: 197294272
GI number: 197294272
Start: 155334
End: 156587
Strand: Reverse
Name: potA [H]
Synonym: PAa_0135
Alternate gene names: 197294272
Gene position: 156587-155334 (Counterclockwise)
Preceding gene: 197294276
Following gene: 197294271
Centisome position: 17.79
GC content: 30.3
Gene sequence:
>1254_bases ATGAAAACATTAATTACTTTAAAAGATTTAACTAAATTTTTTGATAATCAATTAATTTTGAGAGGGATTAATTTAGAAAT CAAACAAAACGAATTTGTTACTTTATTAGGTCCTTCTGGTTGTGGCAAAACTACCATTTTAAGAATTATTGCAGGTTTTG AAAATCCTAGTAGTGGAGAAGTTTTATTTCAACAAAAAAGCATTTTAAATATAGCCGCTCACAAAAGACCAATTAACACT GTTTTTCAAAAATATGCTTTATTTCCTCATTTAAATGTTTTTGAAAACGTTGCTTTTGGCCTCCGCCTCAAAGATTTTAA CGCCACAATTAAAGCTAAATTAGAAAAACTAGAAAAAAATTACCAAAGTGAAATCGAAGAGTTAAACAAAAGTTGGCAAA ACGAATTAACTTTTAGCTCCAAAGAAGAAGTCAAAAAAATCAAGTGCAAATTTCAAGCCAAAAAGAAAGCCTTAAAAGAA CAATTGCAAAAAAACACAGCTTTACTCAAAAAAAGCTTCATTGATAAAAAAGAAAAAGAAAAAGAAATTCAAAAAGATGT TTTTAAATATTTAAAAATCATGGGTTTGCAAGGGTTGGAAAAAAGAACAATTGAACAATTATCAGGAGGGCAACAACAAC GTGTTGCAATCGCGCGTGCTTTAATTAATAAACCTCAAGTTTTGTTATTGGACGAACCTTTATCTAATCTGGATTTAAAG TTGAAACAAGAAATGCAATATGAACTTAAAGAAATCCAAAAAAACGCTGGGATTACTTTTTTATTTGTCACTCACGACCA AGAAGAAGCTTTTACAATGAGTGATAAAGTAGTTGTTATGAATTACGGAGAAATCCAACAAATAGGAACACCGCAAGAAA TTTATAACGAACCCGCTAACCGTTTTGTAGCTCAATTTGTGGGAGAATCAAATTTAATTCAAGGGATTATGAAAGCAGAT AGTTTAGTTTATTTTGATGGTCAAAATTTTAATTGCGTGGATAAAGGGTTTCGAAAAAATGAAAAAGTTGATATCGTTAT TCGACCTGAAGACATTGATATCGTTGGTAAAGGCAAGGGATTAATTACAGGAGTGGTAGAATCTGTTGTTTTCAAAGGAG TACATTGGGAAATTGATGTCAAAACTGCTAAAAGAACTTATACCATTCAAACAACAGACCACGTTAAAATGGATAAAGAA GTGGATATTACTTTTAATCCTGAAGATATTCATGTTATGGAAATTTGGCAATGA
Upstream 100 bases:
>100_bases AACGAAAAAGATATTCAAAAAAACAAAAAAAGAAAAAAGAAAATGAAATAAAACGACAGAAAAAAATTAATTAATTTTAG AAAAGATAAGGGGGTTTGAG
Downstream 100 bases:
>100_bases ACCAAAAAAAAATTTATGATTGCAAAGATAATCAAAAATTATACCGTTTTTTAATTTTTCCTTATTATGTTCTTTTGGTA GGATTAATTTTTGTACCCAT
Product: ABC-type spermidine/putrescine transport systems, ATPase component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MKTLITLKDLTKFFDNQLILRGINLEIKQNEFVTLLGPSGCGKTTILRIIAGFENPSSGEVLFQQKSILNIAAHKRPINT VFQKYALFPHLNVFENVAFGLRLKDFNATIKAKLEKLEKNYQSEIEELNKSWQNELTFSSKEEVKKIKCKFQAKKKALKE QLQKNTALLKKSFIDKKEKEKEIQKDVFKYLKIMGLQGLEKRTIEQLSGGQQQRVAIARALINKPQVLLLDEPLSNLDLK LKQEMQYELKEIQKNAGITFLFVTHDQEEAFTMSDKVVVMNYGEIQQIGTPQEIYNEPANRFVAQFVGESNLIQGIMKAD SLVYFDGQNFNCVDKGFRKNEKVDIVIRPEDIDIVGKGKGLITGVVESVVFKGVHWEIDVKTAKRTYTIQTTDHVKMDKE VDITFNPEDIHVMEIWQ
Sequences:
>Translated_417_residues MKTLITLKDLTKFFDNQLILRGINLEIKQNEFVTLLGPSGCGKTTILRIIAGFENPSSGEVLFQQKSILNIAAHKRPINT VFQKYALFPHLNVFENVAFGLRLKDFNATIKAKLEKLEKNYQSEIEELNKSWQNELTFSSKEEVKKIKCKFQAKKKALKE QLQKNTALLKKSFIDKKEKEKEIQKDVFKYLKIMGLQGLEKRTIEQLSGGQQQRVAIARALINKPQVLLLDEPLSNLDLK LKQEMQYELKEIQKNAGITFLFVTHDQEEAFTMSDKVVVMNYGEIQQIGTPQEIYNEPANRFVAQFVGESNLIQGIMKAD SLVYFDGQNFNCVDKGFRKNEKVDIVIRPEDIDIVGKGKGLITGVVESVVFKGVHWEIDVKTAKRTYTIQTTDHVKMDKE VDITFNPEDIHVMEIWQ >Mature_417_residues MKTLITLKDLTKFFDNQLILRGINLEIKQNEFVTLLGPSGCGKTTILRIIAGFENPSSGEVLFQQKSILNIAAHKRPINT VFQKYALFPHLNVFENVAFGLRLKDFNATIKAKLEKLEKNYQSEIEELNKSWQNELTFSSKEEVKKIKCKFQAKKKALKE QLQKNTALLKKSFIDKKEKEKEIQKDVFKYLKIMGLQGLEKRTIEQLSGGQQQRVAIARALINKPQVLLLDEPLSNLDLK LKQEMQYELKEIQKNAGITFLFVTHDQEEAFTMSDKVVVMNYGEIQQIGTPQEIYNEPANRFVAQFVGESNLIQGIMKAD SLVYFDGQNFNCVDKGFRKNEKVDIVIRPEDIDIVGKGKGLITGVVESVVFKGVHWEIDVKTAKRTYTIQTTDHVKMDKE VDITFNPEDIHVMEIWQ
Specific function: Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system [H]
COG id: COG3842
COG function: function code E; ABC-type spermidine/putrescine transport systems, ATPase components
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=284, Percent_Identity=28.169014084507, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI148612844, Length=106, Percent_Identity=44.3396226415094, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI255708477, Length=106, Percent_Identity=44.3396226415094, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI27881501, Length=115, Percent_Identity=33.0434782608696, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI30795238, Length=115, Percent_Identity=33.0434782608696, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI1787370, Length=213, Percent_Identity=46.0093896713615, Blast_Score=172, Evalue=4e-44, Organism=Escherichia coli, GI87081709, Length=200, Percent_Identity=44, Blast_Score=167, Evalue=2e-42, Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=42.3076923076923, Blast_Score=162, Evalue=4e-41, Organism=Escherichia coli, GI87082267, Length=199, Percent_Identity=40.2010050251256, Blast_Score=147, Evalue=2e-36, Organism=Escherichia coli, GI87081791, Length=184, Percent_Identity=41.8478260869565, Blast_Score=145, Evalue=5e-36, Organism=Escherichia coli, GI1788761, Length=179, Percent_Identity=39.6648044692737, Blast_Score=138, Evalue=7e-34, Organism=Escherichia coli, GI1790467, Length=134, Percent_Identity=46.2686567164179, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI1788450, Length=138, Percent_Identity=42.0289855072464, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1789032, Length=163, Percent_Identity=36.8098159509202, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1789864, Length=310, Percent_Identity=24.5161290322581, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1789891, Length=270, Percent_Identity=29.6296296296296, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1789962, Length=288, Percent_Identity=25.6944444444444, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1787089, Length=295, Percent_Identity=29.1525423728814, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786563, Length=124, Percent_Identity=43.5483870967742, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787500, Length=112, Percent_Identity=36.6071428571429, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1787758, Length=101, Percent_Identity=39.6039603960396, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1787164, Length=91, Percent_Identity=50.5494505494505, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788506, Length=305, Percent_Identity=23.2786885245902, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786398, Length=134, Percent_Identity=35.0746268656716, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1789672, Length=134, Percent_Identity=35.0746268656716, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1786253, Length=173, Percent_Identity=30.0578034682081, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1788225, Length=140, Percent_Identity=34.2857142857143, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1787029, Length=175, Percent_Identity=31.4285714285714, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI145693107, Length=118, Percent_Identity=34.7457627118644, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI87081834, Length=151, Percent_Identity=35.0993377483444, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1788644, Length=128, Percent_Identity=35.15625, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790544, Length=126, Percent_Identity=32.5396825396825, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1786872, Length=134, Percent_Identity=34.3283582089552, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1789586, Length=128, Percent_Identity=34.375, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787547, Length=108, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790190, Length=86, Percent_Identity=40.6976744186046, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786319, Length=146, Percent_Identity=30.8219178082192, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI48994883, Length=166, Percent_Identity=24.6987951807229, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1789873, Length=142, Percent_Identity=33.0985915492958, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788165, Length=123, Percent_Identity=30.8943089430894, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1786803, Length=114, Percent_Identity=32.4561403508772, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1790162, Length=108, Percent_Identity=35.1851851851852, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786345, Length=194, Percent_Identity=27.319587628866, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1787105, Length=105, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1789963, Length=98, Percent_Identity=31.6326530612245, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787759, Length=157, Percent_Identity=28.0254777070064, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1786703, Length=110, Percent_Identity=36.3636363636364, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1790739, Length=96, Percent_Identity=36.4583333333333, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786981, Length=109, Percent_Identity=36.697247706422, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI48994997, Length=100, Percent_Identity=29, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17558664, Length=274, Percent_Identity=28.4671532846715, Blast_Score=88, Evalue=8e-18, Organism=Caenorhabditis elegans, GI25146777, Length=115, Percent_Identity=37.3913043478261, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115534520, Length=89, Percent_Identity=41.5730337078652, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193208177, Length=131, Percent_Identity=31.2977099236641, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17511077, Length=86, Percent_Identity=44.1860465116279, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=89, Percent_Identity=42.6966292134831, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992290, Length=85, Percent_Identity=43.5294117647059, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71983516, Length=126, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71983510, Length=126, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71983523, Length=119, Percent_Identity=33.6134453781513, Blast_Score=65, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6322640, Length=291, Percent_Identity=25.7731958762887, Blast_Score=77, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6324985, Length=140, Percent_Identity=30, Blast_Score=70, Evalue=5e-13, Organism=Drosophila melanogaster, GI85726357, Length=89, Percent_Identity=46.0674157303371, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI24653245, Length=89, Percent_Identity=43.8202247191011, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24666092, Length=109, Percent_Identity=32.1100917431193, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363262, Length=89, Percent_Identity=43.8202247191011, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI24643674, Length=115, Percent_Identity=31.304347826087, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI17136662, Length=134, Percent_Identity=33.5820895522388, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR008995 - InterPro: IPR017879 - InterPro: IPR013611 [H]
Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]
EC number: =3.6.3.31 [H]
Molecular weight: Translated: 47895; Mature: 47895
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLITLKDLTKFFDNQLILRGINLEIKQNEFVTLLGPSGCGKTTILRIIAGFENPSSGE CCCEEEHHHHHHHHCCCEEEEECCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC VLFQQKSILNIAAHKRPINTVFQKYALFPHLNVFENVAFGLRLKDFNATIKAKLEKLEKN EEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHH YQSEIEELNKSWQNELTFSSKEEVKKIKCKFQAKKKALKEQLQKNTALLKKSFIDKKEKE HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH KEIQKDVFKYLKIMGLQGLEKRTIEQLSGGQQQRVAIARALINKPQVLLLDEPLSNLDLK HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHH LKQEMQYELKEIQKNAGITFLFVTHDQEEAFTMSDKVVVMNYGEIQQIGTPQEIYNEPAN HHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCEEEEECCCHHHCCCCHHHHCCHHH RFVAQFVGESNLIQGIMKADSLVYFDGQNFNCVDKGFRKNEKVDIVIRPEDIDIVGKGKG HHHHHHHCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCEEEEECCCCEEEEECCCC LITGVVESVVFKGVHWEIDVKTAKRTYTIQTTDHVKMDKEVDITFNPEDIHVMEIWQ HHHHHHHHHHHCCCEEEEEEEECCEEEEEEECCCEECCCEEEEEECCCCEEEEEECC >Mature Secondary Structure MKTLITLKDLTKFFDNQLILRGINLEIKQNEFVTLLGPSGCGKTTILRIIAGFENPSSGE CCCEEEHHHHHHHHCCCEEEEECCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC VLFQQKSILNIAAHKRPINTVFQKYALFPHLNVFENVAFGLRLKDFNATIKAKLEKLEKN EEEEHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHH YQSEIEELNKSWQNELTFSSKEEVKKIKCKFQAKKKALKEQLQKNTALLKKSFIDKKEKE HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH KEIQKDVFKYLKIMGLQGLEKRTIEQLSGGQQQRVAIARALINKPQVLLLDEPLSNLDLK HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHH LKQEMQYELKEIQKNAGITFLFVTHDQEEAFTMSDKVVVMNYGEIQQIGTPQEIYNEPAN HHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCEEEEECCCHHHCCCCHHHHCCHHH RFVAQFVGESNLIQGIMKADSLVYFDGQNFNCVDKGFRKNEKVDIVIRPEDIDIVGKGKG HHHHHHHCCHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCEEEEECCCCEEEEECCCC LITGVVESVVFKGVHWEIDVKTAKRTYTIQTTDHVKMDKEVDITFNPEDIHVMEIWQ HHHHHHHHHHHCCCEEEEEEEECCEEEEEEECCCEECCCEEEEEECCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA