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The map label for this gene is nrdF [H]

Identifier: 197294249

GI number: 197294249

Start: 122230

End: 123264

Strand: Direct

Name: nrdF [H]

Synonym: PAa_0112

Alternate gene names: 197294249

Gene position: 122230-123264 (Clockwise)

Preceding gene: 197294248

Following gene: 197294250

Centisome position: 13.89

GC content: 29.47

Gene sequence:

>1035_bases
ATGGAAAAAAAATGGAAAAAAACTTATCAAGGAGCTAATTGGAATCAATTAGAAGATGAATATACTCATTTTTTTTATGA
ACAAAATTTAAGTCAGTTTTGGCGTCCTGAAGATATTAGTTTACAAGGCGACCTTGCTGCGTGGAATCATTTGTCTGATG
AAGAAAAAACTACATACACTAGAAACCTTTTGGTATTAACTTTTTTAGACACGTACCAAGGAGATTTAGGGATTCCTGTG
ATTGCTAATTCCATGGATGAAAACAAACACCAAAAAAAAGCTACCCTGAATTTTATGGGAGCTATGGAAAACGCTGTACA
TGCTAAAAGTTATTCTAATATTTTTACCAGTTATTTAAGTAACGAAGATATTAATCAACTTTTTGTTTGGGGTGAAAAAC
AAGTTAATTTGCAAAACATTATGAAAATTATTTTCCGAGTTTATGAAGATTTAGAATACAATATTTATCTTAAAAAATAT
CAATTATCTGAATTTAGTGAATTGCAATACCAAAAAAATCAATGGAAAGCAATGGCAATCTCGGTTTTTTTAGAAACTTG
GCTTTTTTATAGTGGTTTTTATTATCCTTTATATTTTTACGGCCAAGGAAAATTGATGCAAGCAGGCGAAATTATTAATT
TAATTATTCGAGATGAAAGCATTCATGGTGTTTATATCGGCCGTTTAGCCACAGAATTATACCATCTTTTTGATGATGAC
ACAAAAAAAGAATTAAAAACATGGTTAGATGCAACAATGAAGACTTTATATAAAGAACAAATGGAATTAGTAAAAGAAGT
TTATTCCAAATTAAGTTATTTGGAAGAAGATGTCCAAAAATTTGTTCGTTATAATGCTAATAAAGCTTTAATGAATTTGG
GATTTGATGCTTTTTTTCCTGAAGAAAACGTAAATCCCGTTGTCCTTAATGGCCTTAATACGGAGACAAAAACCATGGAT
AATTTTTCCATGAAAGGCAACGGTTATCAAAAAATGCTTTCCGAAGCTTTAAAAGATGAAGATTTTTATTTTTAA

Upstream 100 bases:

>100_bases
TATTTCGAGATTTTTTCATAGCATCGCAACTTATTTTTAATTCAATCATTTGTGTGATTTGATAATTATCTTGAAAAATA
TCAATATTAAAGGGAATATA

Downstream 100 bases:

>100_bases
TTTACTGACATTAGGAAATCCATAACTAAAAAATTATAAAACTTCAAGACTTTATTTTATCACTTTCTTATTTTGAATAA
TGTATAAGGAGAATTTATTA

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MEKKWKKTYQGANWNQLEDEYTHFFYEQNLSQFWRPEDISLQGDLAAWNHLSDEEKTTYTRNLLVLTFLDTYQGDLGIPV
IANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLSNEDINQLFVWGEKQVNLQNIMKIIFRVYEDLEYNIYLKKY
QLSEFSELQYQKNQWKAMAISVFLETWLFYSGFYYPLYFYGQGKLMQAGEIINLIIRDESIHGVYIGRLATELYHLFDDD
TKKELKTWLDATMKTLYKEQMELVKEVYSKLSYLEEDVQKFVRYNANKALMNLGFDAFFPEENVNPVVLNGLNTETKTMD
NFSMKGNGYQKMLSEALKDEDFYF

Sequences:

>Translated_344_residues
MEKKWKKTYQGANWNQLEDEYTHFFYEQNLSQFWRPEDISLQGDLAAWNHLSDEEKTTYTRNLLVLTFLDTYQGDLGIPV
IANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLSNEDINQLFVWGEKQVNLQNIMKIIFRVYEDLEYNIYLKKY
QLSEFSELQYQKNQWKAMAISVFLETWLFYSGFYYPLYFYGQGKLMQAGEIINLIIRDESIHGVYIGRLATELYHLFDDD
TKKELKTWLDATMKTLYKEQMELVKEVYSKLSYLEEDVQKFVRYNANKALMNLGFDAFFPEENVNPVVLNGLNTETKTMD
NFSMKGNGYQKMLSEALKDEDFYF
>Mature_344_residues
MEKKWKKTYQGANWNQLEDEYTHFFYEQNLSQFWRPEDISLQGDLAAWNHLSDEEKTTYTRNLLVLTFLDTYQGDLGIPV
IANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLSNEDINQLFVWGEKQVNLQNIMKIIFRVYEDLEYNIYLKKY
QLSEFSELQYQKNQWKAMAISVFLETWLFYSGFYYPLYFYGQGKLMQAGEIINLIIRDESIHGVYIGRLATELYHLFDDD
TKKELKTWLDATMKTLYKEQMELVKEVYSKLSYLEEDVQKFVRYNANKALMNLGFDAFFPEENVNPVVLNGLNTETKTMD
NFSMKGNGYQKMLSEALKDEDFYF

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=335, Percent_Identity=34.0298507462687, Blast_Score=181, Evalue=5e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 40827; Mature: 40827

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKWKKTYQGANWNQLEDEYTHFFYEQNLSQFWRPEDISLQGDLAAWNHLSDEEKTTYT
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHH
RNLLVLTFLDTYQGDLGIPVIANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLS
HHEEEEEEEHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NEDINQLFVWGEKQVNLQNIMKIIFRVYEDLEYNIYLKKYQLSEFSELQYQKNQWKAMAI
CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHH
SVFLETWLFYSGFYYPLYFYGQGKLMQAGEIINLIIRDESIHGVYIGRLATELYHLFDDD
HHHHHHHHHHCCCEEEEEEECCCCEEECCCEEEEEEECCCCCEEHHHHHHHHHHHHHCCC
TKKELKTWLDATMKTLYKEQMELVKEVYSKLSYLEEDVQKFVRYNANKALMNLGFDAFFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHCCC
EENVNPVVLNGLNTETKTMDNFSMKGNGYQKMLSEALKDEDFYF
CCCCCEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEKKWKKTYQGANWNQLEDEYTHFFYEQNLSQFWRPEDISLQGDLAAWNHLSDEEKTTYT
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHH
RNLLVLTFLDTYQGDLGIPVIANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLS
HHEEEEEEEHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NEDINQLFVWGEKQVNLQNIMKIIFRVYEDLEYNIYLKKYQLSEFSELQYQKNQWKAMAI
CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHH
SVFLETWLFYSGFYYPLYFYGQGKLMQAGEIINLIIRDESIHGVYIGRLATELYHLFDDD
HHHHHHHHHHCCCEEEEEEECCCCEEECCCEEEEEEECCCCCEEHHHHHHHHHHHHHCCC
TKKELKTWLDATMKTLYKEQMELVKEVYSKLSYLEEDVQKFVRYNANKALMNLGFDAFFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHCCC
EENVNPVVLNGLNTETKTMDNFSMKGNGYQKMLSEALKDEDFYF
CCCCCEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969495; 9384377 [H]