| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170757699
Identifier: 170757699
GI number: 170757699
Start: 2227945
End: 2229000
Strand: Reverse
Name: 170757699
Synonym: CLD_2545
Alternate gene names: NA
Gene position: 2229000-2227945 (Counterclockwise)
Preceding gene: 170756900
Following gene: 170754841
Centisome position: 56.31
GC content: 25.57
Gene sequence:
>1056_bases ATGAGTAATTTTTTAGATATGGATTCAAATAGTATTGTTCTTTCAGAATTTTATGAGAATGAAGTAGCCGGTAAGTATAA TTATAATGCTGTATATCAAAGAGAAAAAATTTGGAACATTGAAAAGAAAAGATTCCTTATAGATACAATACTTAAAAATT ATCCTATACCACCGATATTTTTAAGAATGTTTATAGATGAAAATACTGGTGCTACAAAATATGATGTGATTGACGGAAAA CAAAGATTAACTACAATAATAGATTTTATAAATGGTAAAATAAATTTGCCAGATGATTTTAGTATAGGACCATTTGGTAA TGAAAATCTAGACGGGCTTTACTTTAAAGAACTAGATGAATTTGCTGATTATAAAAAGAGATTTTGGAAATATAAAATTC CAATTATATATATTGATTCGAAAGATGATGAAGTTATTAGAAATGTATTTGATAGATTAAATAGAAACGGGGAACCACTA ACTTTTCAAGAATTACGTAATGCTAAATATTGTGAAACAGATTTTTATGAGCTTGTTGAAAAATTATCTGGTATAAATTT TTGGAAAACACGTTTAAGTAACCTTGAGATATCAAGAATGGAAGATAAAGAATTTATTTCAGAATTATTGTTCGTAGTGT TGGAGGATAATATTATTTCATATACCAGAAAAGAATTAGATGGATTATATGAAAAATGGACTAACAAAGAATTCAATAAA AATGATATTATTGAAAAATTTAGAACAATAACAGAATTTATTGAACTACTTGATATAGATTATGATAAATATAAAATTAC TGGTGTAAGTCATTTGTATGGTATTTGGGTATTTTCATACATTTGTGTATTACAAGATATAAGAGCAATTGATATAAAAG GAATGATTGATAAGTTTTATTCAAAGCTTAGGAATAAAGATACATCGCAAGAGTTTATAGAGTATAGTAAAAGTATGAAT TCTGCAACCAAAAGTAAGTCAAGCCGTAGAAAAAGAGTAAATGCGTTACTAGAATATATGTCGCATAATGGTATCAATAT AAAAAATTTACTCTGA
Upstream 100 bases:
>100_bases ATCATAAATCCTAAAATCCCTAGTTCACTTAATGCTGTTGTATCTAGTATTTTTAGTAATTATGTTTCTTATTCAAGTTC AGATATTTTAGGAGGTTTAT
Downstream 100 bases:
>100_bases TTTTTATAAATAGGTAGTTAATCATATAATTTAATTAGATTTTTGAAAATATGAGAAAATTTGTTCAATTTTATAATTTA ATGAAATCTGTATATAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MSNFLDMDSNSIVLSEFYENEVAGKYNYNAVYQREKIWNIEKKRFLIDTILKNYPIPPIFLRMFIDENTGATKYDVIDGK QRLTTIIDFINGKINLPDDFSIGPFGNENLDGLYFKELDEFADYKKRFWKYKIPIIYIDSKDDEVIRNVFDRLNRNGEPL TFQELRNAKYCETDFYELVEKLSGINFWKTRLSNLEISRMEDKEFISELLFVVLEDNIISYTRKELDGLYEKWTNKEFNK NDIIEKFRTITEFIELLDIDYDKYKITGVSHLYGIWVFSYICVLQDIRAIDIKGMIDKFYSKLRNKDTSQEFIEYSKSMN SATKSKSSRRKRVNALLEYMSHNGINIKNLL
Sequences:
>Translated_351_residues MSNFLDMDSNSIVLSEFYENEVAGKYNYNAVYQREKIWNIEKKRFLIDTILKNYPIPPIFLRMFIDENTGATKYDVIDGK QRLTTIIDFINGKINLPDDFSIGPFGNENLDGLYFKELDEFADYKKRFWKYKIPIIYIDSKDDEVIRNVFDRLNRNGEPL TFQELRNAKYCETDFYELVEKLSGINFWKTRLSNLEISRMEDKEFISELLFVVLEDNIISYTRKELDGLYEKWTNKEFNK NDIIEKFRTITEFIELLDIDYDKYKITGVSHLYGIWVFSYICVLQDIRAIDIKGMIDKFYSKLRNKDTSQEFIEYSKSMN SATKSKSSRRKRVNALLEYMSHNGINIKNLL >Mature_350_residues SNFLDMDSNSIVLSEFYENEVAGKYNYNAVYQREKIWNIEKKRFLIDTILKNYPIPPIFLRMFIDENTGATKYDVIDGKQ RLTTIIDFINGKINLPDDFSIGPFGNENLDGLYFKELDEFADYKKRFWKYKIPIIYIDSKDDEVIRNVFDRLNRNGEPLT FQELRNAKYCETDFYELVEKLSGINFWKTRLSNLEISRMEDKEFISELLFVVLEDNIISYTRKELDGLYEKWTNKEFNKN DIIEKFRTITEFIELLDIDYDKYKITGVSHLYGIWVFSYICVLQDIRAIDIKGMIDKFYSKLRNKDTSQEFIEYSKSMNS ATKSKSSRRKRVNALLEYMSHNGINIKNLL
Specific function: Unknown
COG id: COG1479
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41821; Mature: 41690
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFLDMDSNSIVLSEFYENEVAGKYNYNAVYQREKIWNIEKKRFLIDTILKNYPIPPIF CCCCCCCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHH LRMFIDENTGATKYDVIDGKQRLTTIIDFINGKINLPDDFSIGPFGNENLDGLYFKELDE HHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH FADYKKRFWKYKIPIIYIDSKDDEVIRNVFDRLNRNGEPLTFQELRNAKYCETDFYELVE HHHHHHHHHEEECCEEEECCCCHHHHHHHHHHHCCCCCCEEHHHHCCCCCCCHHHHHHHH KLSGINFWKTRLSNLEISRMEDKEFISELLFVVLEDNIISYTRKELDGLYEKWTNKEFNK HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH NDIIEKFRTITEFIELLDIDYDKYKITGVSHLYGIWVFSYICVLQDIRAIDIKGMIDKFY HHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKLRNKDTSQEFIEYSKSMNSATKSKSSRRKRVNALLEYMSHNGINIKNLL HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCC >Mature Secondary Structure SNFLDMDSNSIVLSEFYENEVAGKYNYNAVYQREKIWNIEKKRFLIDTILKNYPIPPIF CCCCCCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHH LRMFIDENTGATKYDVIDGKQRLTTIIDFINGKINLPDDFSIGPFGNENLDGLYFKELDE HHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH FADYKKRFWKYKIPIIYIDSKDDEVIRNVFDRLNRNGEPLTFQELRNAKYCETDFYELVE HHHHHHHHHEEECCEEEECCCCHHHHHHHHHHHCCCCCCEEHHHHCCCCCCCHHHHHHHH KLSGINFWKTRLSNLEISRMEDKEFISELLFVVLEDNIISYTRKELDGLYEKWTNKEFNK HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH NDIIEKFRTITEFIELLDIDYDKYKITGVSHLYGIWVFSYICVLQDIRAIDIKGMIDKFY HHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKLRNKDTSQEFIEYSKSMNSATKSKSSRRKRVNALLEYMSHNGINIKNLL HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA