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The map label for this gene is yybA [H]

Identifier: 170757617

GI number: 170757617

Start: 1229682

End: 1230119

Strand: Direct

Name: yybA [H]

Synonym: CLD_3458

Alternate gene names: 170757617

Gene position: 1229682-1230119 (Clockwise)

Preceding gene: 170754219

Following gene: 170755092

Centisome position: 31.07

GC content: 23.74

Gene sequence:

>438_bases
TTGGGGAAAAACACACAGTGCGTAGGTAGATATATATCAATGTTATATAGAGCAAGTAATTGCTATATAAATAAGGAACT
TTGTAAATATGGTATAGGAAGTGGTCAATATATCTTTTTATTGTATGTATTTAATAATAATGGATGCAATCAAGAAGAAA
TAAGTACTGTTTTAAATATAGACAAAGGTACTACAGCTAGAGCATTACAAAAATTAGAAAAAGAAGGATACATAAATAAA
GAGATTGATAAAAATGATAGAAGAATTAATCATATAATTATTACTAAAAAGGGTTCTGAAATAAAAAATATTATAATAAA
AATTTTAAATTCTTGGGAAAAAATGTTGTATTCAGATTTTACGGAAAAAGAAAAAAAGGAACTTATGAAATTATTAGAAA
AAGCTTCCTTGAATTGTCACAATTATAAAGCTAAATAA

Upstream 100 bases:

>100_bases
GATAAAGGAAAATATTTGAATAATAGTTGCAAGTACAACTAATTTGTGATATATTAAGTTGTATTTGCAACTATTATAAA
TTTAATGGAGGAGTACAAGA

Downstream 100 bases:

>100_bases
TAGATTGGAGGAATAAAATGGATAGACAAAAACAATTAGGAGAAGAAAGTGTAAAAAAATTATTATTAAAATTTTCTGCA
CCAGCCATTATGGGAATGAT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MGKNTQCVGRYISMLYRASNCYINKELCKYGIGSGQYIFLLYVFNNNGCNQEEISTVLNIDKGTTARALQKLEKEGYINK
EIDKNDRRINHIIITKKGSEIKNIIIKILNSWEKMLYSDFTEKEKKELMKLLEKASLNCHNYKAK

Sequences:

>Translated_145_residues
MGKNTQCVGRYISMLYRASNCYINKELCKYGIGSGQYIFLLYVFNNNGCNQEEISTVLNIDKGTTARALQKLEKEGYINK
EIDKNDRRINHIIITKKGSEIKNIIIKILNSWEKMLYSDFTEKEKKELMKLLEKASLNCHNYKAK
>Mature_144_residues
GKNTQCVGRYISMLYRASNCYINKELCKYGIGSGQYIFLLYVFNNNGCNQEEISTVLNIDKGTTARALQKLEKEGYINKE
IDKNDRRINHIIITKKGSEIKNIIIKILNSWEKMLYSDFTEKEKKELMKLLEKASLNCHNYKAK

Specific function: Negative Regulator Of The Multidrug Operon Emrab. [C]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16872; Mature: 16741

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKNTQCVGRYISMLYRASNCYINKELCKYGIGSGQYIFLLYVFNNNGCNQEEISTVLNI
CCCCHHHHHHHHHHHHHHCCCEECHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHCC
DKGTTARALQKLEKEGYINKEIDKNDRRINHIIITKKGSEIKNIIIKILNSWEKMLYSDF
CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHC
TEKEKKELMKLLEKASLNCHNYKAK
CHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GKNTQCVGRYISMLYRASNCYINKELCKYGIGSGQYIFLLYVFNNNGCNQEEISTVLNI
CCCHHHHHHHHHHHHHHCCCEECHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHCC
DKGTTARALQKLEKEGYINKEIDKNDRRINHIIITKKGSEIKNIIIKILNSWEKMLYSDF
CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHC
TEKEKKELMKLLEKASLNCHNYKAK
CHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]