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The map label for this gene is ydeF [H]

Identifier: 170757450

GI number: 170757450

Start: 2182976

End: 2184370

Strand: Reverse

Name: ydeF [H]

Synonym: CLD_2591

Alternate gene names: 170757450

Gene position: 2184370-2182976 (Counterclockwise)

Preceding gene: 170754984

Following gene: 170755495

Centisome position: 55.19

GC content: 32.47

Gene sequence:

>1395_bases
ATGCCTGTAAATTCATTTGAAAATTATCCAATGTCATGGAAACCTGATAAAAGGCAATTAGGTTCTCCATTATATCTTTC
TATTGCTAGTTTATTAGAATATGATATACTTAACGGCTATCTTGCACCTAACACAAAACTTCCACCTCAAAGAGAACTGG
CAGATTACCTTGATATTAATCTAAGTACTATAACAAGAGCCTTTAAAATCTGCGAAGCTAAAGGATTAATTTATGCTGTT
ATTGGAAGTGGAACCTTTGTTTCTCCTAATGCTGGGAGTGCTATTTTCTTAGCGGACAATGATGCAAATAAGAACTATAT
AGAGATGGGTGTTATAAAACCACTGGATTGCTCTAATATATTAGTTGCAGAAACTATTAAAAGCATTGCCAATAAAAATT
ATCTGGAAAAGCTATTGGATTACAGACATCCTTTAGGATGCCCTTATCACAGAATGGCTGCAAAAAAATGGATGCAGCGC
TTTTCTATGGACGTATCTATTGAAAATATAGCTATAACATCAGGAGGGCAAAATGCTATTACACTGCTCTTAATTTCTAT
TTTTAATCCTGGTGATAAAATTGCAGTGGACACTTATACTTATCCTAATTTTATTGAATTAGCTAATATGTTGAATATTC
AATTAATACCTATTGAAGCAGATGAATTAGGAATTATACCAGAACGATTAGATCTTGCTTGTAGTATAAATCATATAAAA
GGAATATATATAAATCCTTCCTGTAATAATCCAACTGCTGTAATTATGGATATGAAGCGCAGAAAGGAAATTGCAGATGT
GATAAAGAAGCATAAACTTATTCTAATGGAAGATGATATTTATTCTTTTCTTGCTCCACAAGGTTATTTACCAATATCAC
ATTTTGTTCCAGAACAGTTTATTTATATACTAAGTATATCAAAAGCCTTAAGTTCTGGCATGAGAGTGGGATTTATGGGT
TACGCAAATCAGTTTGTTGAAAAAATTACTAGAGGTATTTACAATATAAATATAAAAACGTCCTCACTAAATGCAGAGAT
CGTAACTGAAATGATTAACACTGGAATTGCTGATAAAATTATTAGGCAGAAAAAAGAAATTGCTGAAGAACGCAATGAAC
TATATAAACAATATTTTGAAATTACAAATCCTCATGAAAATCCGCTAAGCTTTTTTCGGTGGCTTCCACTGTGTCAAAAG
TATCAAGGAAAACAATTTGAACAGGATGCTTTAAAACATGGTATTCGCGTATACCATTCCTATCGATTCTTAACTGGAAA
AGATGAATCAGCGCAATTTATCCGCATTTCCCTAACCTCTGTGACAGACTCTCAAGAATTAGATAAGGGACTTCGAATGC
TTAATGATTTTTTGCTCCAGACAAAAGAAAGTTGA

Upstream 100 bases:

>100_bases
TTTTAGGTAAAATCATACTATGATAGTAAGTATATCATTGTAAGTGTATGGTCTCAATGATATAATTGTATGCAAGACAA
TTATTTTAAGGAGGTTCCAT

Downstream 100 bases:

>100_bases
TAAAGAAGTTAATTGAATAATCTATTCGTATTAGCCAACTTAAGATAGCCTGATGTATTTGATTCATTTATTTTATAGAA
AAGGAGATAGAAATAAATGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MPVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDINLSTITRAFKICEAKGLIYAV
IGSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNILVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQR
FSMDVSIENIAITSGGQNAITLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACSINHIK
GIYINPSCNNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQFIYILSISKALSSGMRVGFMG
YANQFVEKITRGIYNINIKTSSLNAEIVTEMINTGIADKIIRQKKEIAEERNELYKQYFEITNPHENPLSFFRWLPLCQK
YQGKQFEQDALKHGIRVYHSYRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQTKES

Sequences:

>Translated_464_residues
MPVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDINLSTITRAFKICEAKGLIYAV
IGSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNILVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQR
FSMDVSIENIAITSGGQNAITLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACSINHIK
GIYINPSCNNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQFIYILSISKALSSGMRVGFMG
YANQFVEKITRGIYNINIKTSSLNAEIVTEMINTGIADKIIRQKKEIAEERNELYKQYFEITNPHENPLSFFRWLPLCQK
YQGKQFEQDALKHGIRVYHSYRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQTKES
>Mature_463_residues
PVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDINLSTITRAFKICEAKGLIYAVI
GSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNILVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQRF
SMDVSIENIAITSGGQNAITLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACSINHIKG
IYINPSCNNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQFIYILSISKALSSGMRVGFMGY
ANQFVEKITRGIYNINIKTSSLNAEIVTEMINTGIADKIIRQKKEIAEERNELYKQYFEITNPHENPLSFFRWLPLCQKY
QGKQFEQDALKHGIRVYHSYRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQTKES

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=24.1379310344828, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=24.1379310344828, Blast_Score=93, Evalue=5e-19,
Organism=Escherichia coli, GI1790797, Length=409, Percent_Identity=26.161369193154, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787710, Length=446, Percent_Identity=22.6457399103139, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52759; Mature: 52628

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDIN
CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHCCC
LSTITRAFKICEAKGLIYAVIGSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNI
HHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCEEEEECCCCCCCEEEECCCCCCCCCCH
LVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQRFSMDVSIENIAITSGGQNAI
HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEE
TLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACSINHIK
EEEEEEHCCCCCCEEEEECCCCCHHHHHHHHEEEEEEECCCCCCCCHHHHHHEEEECCEE
GIYINPSCNNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQF
EEEECCCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCCHHHHCHHHH
IYILSISKALSSGMRVGFMGYANQFVEKITRGIYNINIKTSSLNAEIVTEMINTGIADKI
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCHHHHH
IRQKKEIAEERNELYKQYFEITNPHENPLSFFRWLPLCQKYQGKQFEQDALKHGIRVYHS
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHE
YRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQTKES
EEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVNSFENYPMSWKPDKRQLGSPLYLSIASLLEYDILNGYLAPNTKLPPQRELADYLDIN
CCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHCCC
LSTITRAFKICEAKGLIYAVIGSGTFVSPNAGSAIFLADNDANKNYIEMGVIKPLDCSNI
HHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCEEEEECCCCCCCEEEECCCCCCCCCCH
LVAETIKSIANKNYLEKLLDYRHPLGCPYHRMAAKKWMQRFSMDVSIENIAITSGGQNAI
HHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEE
TLLLISIFNPGDKIAVDTYTYPNFIELANMLNIQLIPIEADELGIIPERLDLACSINHIK
EEEEEEHCCCCCCEEEEECCCCCHHHHHHHHEEEEEEECCCCCCCCHHHHHHEEEECCEE
GIYINPSCNNPTAVIMDMKRRKEIADVIKKHKLILMEDDIYSFLAPQGYLPISHFVPEQF
EEEECCCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCCHHHHCHHHH
IYILSISKALSSGMRVGFMGYANQFVEKITRGIYNINIKTSSLNAEIVTEMINTGIADKI
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHCCHHHHH
IRQKKEIAEERNELYKQYFEITNPHENPLSFFRWLPLCQKYQGKQFEQDALKHGIRVYHS
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHE
YRFLTGKDESAQFIRISLTSVTDSQELDKGLRMLNDFLLQTKES
EEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]