Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

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The map label for this gene is ylxW [H]

Identifier: 170757335

GI number: 170757335

Start: 1628023

End: 1628736

Strand: Direct

Name: ylxW [H]

Synonym: CLD_3088

Alternate gene names: 170757335

Gene position: 1628023-1628736 (Clockwise)

Preceding gene: 170757819

Following gene: 170756306

Centisome position: 41.13

GC content: 28.99

Gene sequence:

>714_bases
ATGAAAAAGACTTCACAAATTAGTATAGCATTAGTTTGTGCTATATTAGGATTTATGCTATCTTATCAATTTAAATCCAT
AGTAAAACAAGAAAAAACTTTAAACATAACAAGTAAAAGCAGTGAAGATGTTACTGTAGAAATTGATCAATATAAAAAAG
AAAAGGTTGAATTAGAAAAAAAAGTAGATGAACTTCAAGGAAAATTAAAAGATTATGAGAATAAGGCTTCTTCCAAAAGT
GATGCTACTAAAAATTTAATTAAAGAGCTTGAAACCACAAGACTTCTAATCGGAAATACAAATGTGGAGGGCCCTGGTGT
AGTAATATATTTAAACCCTATAAACGATATATTTGGTTCTGCTCCAAGCGATAAGCTAACGGACAAGCATCTAGTTTATT
TAGTAAATGAATTGAGATTTGCAGGGGCAGAGTCTATAGCTATAAATGGCATAAGGATAGTTAATAGAACGGGGATAAGA
ATTGCTGGAAACTATATAATGATTAATGGAGAAAGAGTATCACCAAATAAAAGAATAACTATAGAAGCTATAGGAAACAA
AGACTTATTATATGCCACATTAGATTTTCCAGAGGTTTTTGAGTCCTTTAAAGCTATATGTGATATAAAGTATGAAAAAA
AAGACAGTATAAAAATGTCGAAATATAACAAGGTTTATAAAAATGAATATGCAAAACCTGTGGAAGAAAAATAA

Upstream 100 bases:

>100_bases
ATTTTAAAAAGGGATGAACTTAAAAAAGCAAAAAAAGGATATGTAGATGTGAGTTATGAAGGAAATCCTGTATTTTATAT
AGAAAAATAGGAGGTAAGAA

Downstream 100 bases:

>100_bases
TTTCTACTAAAAGTAATATAGGAGGACTTTTATATGATAGGTTTTTTAGGACTTATAATAGGCATTATAATAGGAGCAGT
TTTTCAAGTTAATATACCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKKTSQISIALVCAILGFMLSYQFKSIVKQEKTLNITSKSSEDVTVEIDQYKKEKVELEKKVDELQGKLKDYENKASSKS
DATKNLIKELETTRLLIGNTNVEGPGVVIYLNPINDIFGSAPSDKLTDKHLVYLVNELRFAGAESIAINGIRIVNRTGIR
IAGNYIMINGERVSPNKRITIEAIGNKDLLYATLDFPEVFESFKAICDIKYEKKDSIKMSKYNKVYKNEYAKPVEEK

Sequences:

>Translated_237_residues
MKKTSQISIALVCAILGFMLSYQFKSIVKQEKTLNITSKSSEDVTVEIDQYKKEKVELEKKVDELQGKLKDYENKASSKS
DATKNLIKELETTRLLIGNTNVEGPGVVIYLNPINDIFGSAPSDKLTDKHLVYLVNELRFAGAESIAINGIRIVNRTGIR
IAGNYIMINGERVSPNKRITIEAIGNKDLLYATLDFPEVFESFKAICDIKYEKKDSIKMSKYNKVYKNEYAKPVEEK
>Mature_237_residues
MKKTSQISIALVCAILGFMLSYQFKSIVKQEKTLNITSKSSEDVTVEIDQYKKEKVELEKKVDELQGKLKDYENKASSKS
DATKNLIKELETTRLLIGNTNVEGPGVVIYLNPINDIFGSAPSDKLTDKHLVYLVNELRFAGAESIAINGIRIVNRTGIR
IAGNYIMINGERVSPNKRITIEAIGNKDLLYATLDFPEVFESFKAICDIKYEKKDSIKMSKYNKVYKNEYAKPVEEK

Specific function: May be involved in cell division and sporulation [H]

COG id: COG3879

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0749 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010273 [H]

Pfam domain/function: PF05949 DUF881 [H]

EC number: NA

Molecular weight: Translated: 26787; Mature: 26787

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTSQISIALVCAILGFMLSYQFKSIVKQEKTLNITSKSSEDVTVEIDQYKKEKVELEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEHHHHHHHHHHHHH
KVDELQGKLKDYENKASSKSDATKNLIKELETTRLLIGNTNVEGPGVVIYLNPINDIFGS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEEEECCCCCCCEEEEEECCCHHHCCC
APSDKLTDKHLVYLVNELRFAGAESIAINGIRIVNRTGIRIAGNYIMINGERVSPNKRIT
CCCCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEEECCEEEECCEEEEECCEECCCCEEE
IEAIGNKDLLYATLDFPEVFESFKAICDIKYEKKDSIKMSKYNKVYKNEYAKPVEEK
EEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKTSQISIALVCAILGFMLSYQFKSIVKQEKTLNITSKSSEDVTVEIDQYKKEKVELEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEHHHHHHHHHHHHH
KVDELQGKLKDYENKASSKSDATKNLIKELETTRLLIGNTNVEGPGVVIYLNPINDIFGS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEEEECCCCCCCEEEEEECCCHHHCCC
APSDKLTDKHLVYLVNELRFAGAESIAINGIRIVNRTGIRIAGNYIMINGERVSPNKRIT
CCCCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEEECCEEEECCEEEEECCEECCCCEEE
IEAIGNKDLLYATLDFPEVFESFKAICDIKYEKKDSIKMSKYNKVYKNEYAKPVEEK
EEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2556375; 9384377; 12207695 [H]