Click here to switch to the map view.

The map label for this gene is agrA [H]

Identifier: 170757076

GI number: 170757076

Start: 1311649

End: 1312368

Strand: Direct

Name: agrA [H]

Synonym: CLD_3382

Alternate gene names: 170757076

Gene position: 1311649-1312368 (Clockwise)

Preceding gene: 170755439

Following gene: 170757032

Centisome position: 33.14

GC content: 26.39

Gene sequence:

>720_bases
ATGTTAAGAGTAATGATTTGTGAGGATAATGAAGTACATAGAGTTAAGTTGAAGCAAATTGTAGAGAATACTATCCTAAG
AGAAAAATTAGATTTAGATATAATACTAGCTACAGAAAATCCTGAGGAAATAATAAGTTATATAAAAGAAAACAGGAGCA
CTGGTATTTATCTTTTGGATGTGGAGCTAAAAAATGATATAAATGGTATAAAGCTTGGCGAAAAAATTAGAGAATTAGAT
CCATTAGGATATATAATATTTACTACTACTCATTTAGAAATGAGTTATTTAGCATTTAAATATAAAGTAGAAGCTATGGA
TTATGTAATTAAGGATGATGATGATTTTAAAGAAAGAGTAAATAGTTGTATTATAAAGGCTTATAATAGATATAATAAAC
AAGAACATGAAGAAGAATATATTTCAATAGATACAGATACACGAATAATAAATATTAGACCCAGTGACATTCTATTTATT
GAAACTACAGGAACCCCTCATAAAATAAGGATTCATGAGGAAACAAGACAGATTGAAATGTATGCTAATTTGAGAGATAT
ACAAAAAAAACTACCTTCAAGCTTTTATAGGTGCCATAAATCTTACATTGTAAACAAAAATAAAATTGAAGAAATAGACA
AGAAACATAATAAGATAATAATGAAAAATCAGGAAGAGTGTTATGTTTCCTTTAGATATATGAAGGGACTAATAGTATGA

Upstream 100 bases:

>100_bases
AAAGAAAACATTATCTTTCATGGGAAAAAATGTTGTTAGTATTTTTCATGTTTATATATGAATATCAAAAAGTTTTATAT
AAAAGTAAGGAGAAAAAGTA

Downstream 100 bases:

>100_bases
CTTTTACTAATTTTATAAATATGTTTTTACATTATACAATTATTCCCTCTATACTAATGAGTATTTTGTGCTTAATTTCA
ATATATATTTTATATAAAGA

Product: LytTr family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIILATENPEEIISYIKENRSTGIYLLDVELKNDINGIKLGEKIRELD
PLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERVNSCIIKAYNRYNKQEHEEEYISIDTDTRIINIRPSDILFI
ETTGTPHKIRIHEETRQIEMYANLRDIQKKLPSSFYRCHKSYIVNKNKIEEIDKKHNKIIMKNQEECYVSFRYMKGLIV

Sequences:

>Translated_239_residues
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIILATENPEEIISYIKENRSTGIYLLDVELKNDINGIKLGEKIRELD
PLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERVNSCIIKAYNRYNKQEHEEEYISIDTDTRIINIRPSDILFI
ETTGTPHKIRIHEETRQIEMYANLRDIQKKLPSSFYRCHKSYIVNKNKIEEIDKKHNKIIMKNQEECYVSFRYMKGLIV
>Mature_239_residues
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIILATENPEEIISYIKENRSTGIYLLDVELKNDINGIKLGEKIRELD
PLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERVNSCIIKAYNRYNKQEHEEEYISIDTDTRIINIRPSDILFI
ETTGTPHKIRIHEETRQIEMYANLRDIQKKLPSSFYRCHKSYIVNKNKIEEIDKKHNKIIMKNQEECYVSFRYMKGLIV

Specific function: Required for high-level post-exponential phase expression of a series of secreted proteins [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=227, Percent_Identity=25.5506607929515, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87082052, Length=250, Percent_Identity=25.6, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28532; Mature: 28532

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIILATENPEEIISYIKENRSTGIYLLD
CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
VELKNDINGIKLGEKIRELDPLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERV
EEECCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEECCCHHHHHHH
NSCIIKAYNRYNKQEHEEEYISIDTDTRIINIRPSDILFIETTGTPHKIRIHEETRQIEM
HHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCEEEEEECCCCEEEEEECHHHEEHH
YANLRDIQKKLPSSFYRCHKSYIVNKNKIEEIDKKHNKIIMKNQEECYVSFRYMKGLIV
HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCHHHEEEEEHHCCCCC
>Mature Secondary Structure
MLRVMICEDNEVHRVKLKQIVENTILREKLDLDIILATENPEEIISYIKENRSTGIYLLD
CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
VELKNDINGIKLGEKIRELDPLGYIIFTTTHLEMSYLAFKYKVEAMDYVIKDDDDFKERV
EEECCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEECCCHHHHHHH
NSCIIKAYNRYNKQEHEEEYISIDTDTRIINIRPSDILFIETTGTPHKIRIHEETRQIEM
HHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCEEEEEECCCCEEEEEECHHHEEHH
YANLRDIQKKLPSSFYRCHKSYIVNKNKIEEIDKKHNKIIMKNQEECYVSFRYMKGLIV
HHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCHHHEEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA