| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170757032
Identifier: 170757032
GI number: 170757032
Start: 1312365
End: 1313708
Strand: Direct
Name: 170757032
Synonym: CLD_3380
Alternate gene names: NA
Gene position: 1312365-1313708 (Clockwise)
Preceding gene: 170757076
Following gene: 170756223
Centisome position: 33.16
GC content: 22.99
Gene sequence:
>1344_bases ATGACTTTTACTAATTTTATAAATATGTTTTTACATTATACAATTATTCCCTCTATACTAATGAGTATTTTGTGCTTAAT TTCAATATATATTTTATATAAAGACATAATAAGTATAAGTGATATTAAAAAATATTTTATCATTTCATTTGTAGCAGGAA TGGTTCTCTCTACTGGATCATATACATTAATACTTCCTATACTTTCAGTTATAACCATTGTTCAATTAAAAAATAATGAA AATGAAGATAAAATAAAAATATTGATAACTATTTATAGTGTTTATTTTGCAAACACAATATATATCTTTATATATACATT TTCAGGTGCAAGGTTGCACAATATACCACTTAAATATACATTGGTTCAATTTATAATAATGCTGTTTATTATAGTTACAT TATGTTTAATAATAAAGAGAATTGGCTCAAAGAAAAAGAAAAATGAAGAACTTTCATCAGCCGAAATAAGATTTAGAATG ATTTTAATAATAAGCACATTATTAACTGTGATGATAGCATCAATTTATATATTTACATGTACATCTATAGTAAATAATCA AAAGATAGATTTTATTATGGGCAATTTTGTTCCTGAAGCGTTGCCACTAATATCAATTATATTTACAAGTATTATAGTTT ATTATTATGATAAAAATGTTGAATATAGAGTTAAATTGAGAAGAGAAATTGAAGAAAAAAATGAAATAGAAGAATATTCA CATATTATAGAAGATATGTACAGTGAAACAAGAAGATTTAAACATGATTATATAAATATGCTTTCACCTCTTAAGGAATA TATAGATAATGAAGATATAGAAGGACTTAGTGAGTTTTTTTATAATAACGTTATTGATATGGACAAAAATATAAAATGGA GCAATAGTAATATAGATAAACTTAAATATATTAAATTTTCAGGACTAAAGGCAATATTATCAACAAAACTTATAAAAGCT TCATCAATGAATATAGACATAAATGTTCATATTGTAGAAGATATTGATTATATACATATGAATATAATGGATTTATGTAG AATAATAGGAATACTTATGGATAATGCCATTGAAGCATCAGGAGAATGTGAAGCACCTAAGATATGTATTGTTGTTGCAA ATAAAAATGATTATGTGGTTATAGCATTACATAATAATTTTTTCGGAGACAAGCCTTTAATTCATAAAATATACAAAGAA GGATTTTCTACAAAGGGCAGAGGAAGAGGATTAGGCCTATATACTGTAAAAAATATTATAGATATAAAATATGAAAATGT ATTCTTAAATACATCTATTGAAGGAAATGTGTTTATTCAAGAAATATGGATAAAATATATATAA
Upstream 100 bases:
>100_bases AAAATAAAATTGAAGAAATAGACAAGAAACATAATAAGATAATAATGAAAAATCAGGAAGAGTGTTATGTTTCCTTTAGA TATATGAAGGGACTAATAGT
Downstream 100 bases:
>100_bases ACAGAGTTCTCGGTTCCAGAAAGAGTTTTACTACCACTAAAATCTAAGGACATAGCCGTTCTTTACTCTCACTTTTAAGA AGATGGGAGTATTAGAGCAG
Product: sensor histidine kinase
Products: NA
Alternate protein names: Sensor Histidine Kinase; Signal Transduction Protein; Accessory Gene Regulator Protein C; Histidine Protein Kinase; Histidine Kinase Of Competence Regulon ComD; Accessory Gene Regulator C; Two-Component Sensor Histidine Kinase; Histidine Protein Kinase PlnB; Accessory Protein Regulator Protein C; Sensor Histidine Kinase ComD; Histidine Kinase Domain Protein; Histidine Protein Kinase ComD; Two-Component System Histidine Kinase; Sensor Histidine Kinase-Like Protein; Two Component Sensor Transduction Histidine Kinase; Sensory Transduction Protein Kinase; Sensor Kinase; AbpK Sensory Transduction Histidine Kinase; Lactacin F Two-Component System Histidine Kinase; Sensor Histidine Kinase BlpH; Two-Component Sensor Kinase; Signal Transduction Protein With A C-Terminal ATPase Domain; Histidine Kinase-Like ATPase; Bacteriocin Production-Related Histidine Kinase
Number of amino acids: Translated: 447; Mature: 446
Protein sequence:
>447_residues MTFTNFINMFLHYTIIPSILMSILCLISIYILYKDIISISDIKKYFIISFVAGMVLSTGSYTLILPILSVITIVQLKNNE NEDKIKILITIYSVYFANTIYIFIYTFSGARLHNIPLKYTLVQFIIMLFIIVTLCLIIKRIGSKKKKNEELSSAEIRFRM ILIISTLLTVMIASIYIFTCTSIVNNQKIDFIMGNFVPEALPLISIIFTSIIVYYYDKNVEYRVKLRREIEEKNEIEEYS HIIEDMYSETRRFKHDYINMLSPLKEYIDNEDIEGLSEFFYNNVIDMDKNIKWSNSNIDKLKYIKFSGLKAILSTKLIKA SSMNIDINVHIVEDIDYIHMNIMDLCRIIGILMDNAIEASGECEAPKICIVVANKNDYVVIALHNNFFGDKPLIHKIYKE GFSTKGRGRGLGLYTVKNIIDIKYENVFLNTSIEGNVFIQEIWIKYI
Sequences:
>Translated_447_residues MTFTNFINMFLHYTIIPSILMSILCLISIYILYKDIISISDIKKYFIISFVAGMVLSTGSYTLILPILSVITIVQLKNNE NEDKIKILITIYSVYFANTIYIFIYTFSGARLHNIPLKYTLVQFIIMLFIIVTLCLIIKRIGSKKKKNEELSSAEIRFRM ILIISTLLTVMIASIYIFTCTSIVNNQKIDFIMGNFVPEALPLISIIFTSIIVYYYDKNVEYRVKLRREIEEKNEIEEYS HIIEDMYSETRRFKHDYINMLSPLKEYIDNEDIEGLSEFFYNNVIDMDKNIKWSNSNIDKLKYIKFSGLKAILSTKLIKA SSMNIDINVHIVEDIDYIHMNIMDLCRIIGILMDNAIEASGECEAPKICIVVANKNDYVVIALHNNFFGDKPLIHKIYKE GFSTKGRGRGLGLYTVKNIIDIKYENVFLNTSIEGNVFIQEIWIKYI >Mature_446_residues TFTNFINMFLHYTIIPSILMSILCLISIYILYKDIISISDIKKYFIISFVAGMVLSTGSYTLILPILSVITIVQLKNNEN EDKIKILITIYSVYFANTIYIFIYTFSGARLHNIPLKYTLVQFIIMLFIIVTLCLIIKRIGSKKKKNEELSSAEIRFRMI LIISTLLTVMIASIYIFTCTSIVNNQKIDFIMGNFVPEALPLISIIFTSIIVYYYDKNVEYRVKLRREIEEKNEIEEYSH IIEDMYSETRRFKHDYINMLSPLKEYIDNEDIEGLSEFFYNNVIDMDKNIKWSNSNIDKLKYIKFSGLKAILSTKLIKAS SMNIDINVHIVEDIDYIHMNIMDLCRIIGILMDNAIEASGECEAPKICIVVANKNDYVVIALHNNFFGDKPLIHKIYKEG FSTKGRGRGLGLYTVKNIIDIKYENVFLNTSIEGNVFIQEIWIKYI
Specific function: Unknown
COG id: COG2972
COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51934; Mature: 51803
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFTNFINMFLHYTIIPSILMSILCLISIYILYKDIISISDIKKYFIISFVAGMVLSTGS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YTLILPILSVITIVQLKNNENEDKIKILITIYSVYFANTIYIFIYTFSGARLHNIPLKYT HHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHCEEEEEEEEECCCEEECCCHHHH LVQFIIMLFIIVTLCLIIKRIGSKKKKNEELSSAEIRFRMILIISTLLTVMIASIYIFTC HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSIVNNQKIDFIMGNFVPEALPLISIIFTSIIVYYYDKNVEYRVKLRREIEEKNEIEEYS HHHHCCCCEEEEEHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHH HIIEDMYSETRRFKHDYINMLSPLKEYIDNEDIEGLSEFFYNNVIDMDKNIKWSNSNIDK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCC LKYIKFSGLKAILSTKLIKASSMNIDINVHIVEDIDYIHMNIMDLCRIIGILMDNAIEAS EEEEEHHHHHHHHHHHHHEECCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC GECEAPKICIVVANKNDYVVIALHNNFFGDKPLIHKIYKEGFSTKGRGRGLGLYTVKNII CCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHH DIKYENVFLNTSIEGNVFIQEIWIKYI EEEEEEEEEECCCCCCEEHHHHHHHCC >Mature Secondary Structure TFTNFINMFLHYTIIPSILMSILCLISIYILYKDIISISDIKKYFIISFVAGMVLSTGS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YTLILPILSVITIVQLKNNENEDKIKILITIYSVYFANTIYIFIYTFSGARLHNIPLKYT HHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHCEEEEEEEEECCCEEECCCHHHH LVQFIIMLFIIVTLCLIIKRIGSKKKKNEELSSAEIRFRMILIISTLLTVMIASIYIFTC HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSIVNNQKIDFIMGNFVPEALPLISIIFTSIIVYYYDKNVEYRVKLRREIEEKNEIEEYS HHHHCCCCEEEEEHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHH HIIEDMYSETRRFKHDYINMLSPLKEYIDNEDIEGLSEFFYNNVIDMDKNIKWSNSNIDK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCC LKYIKFSGLKAILSTKLIKASSMNIDINVHIVEDIDYIHMNIMDLCRIIGILMDNAIEAS EEEEEHHHHHHHHHHHHHEECCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC GECEAPKICIVVANKNDYVVIALHNNFFGDKPLIHKIYKEGFSTKGRGRGLGLYTVKNII CCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHH DIKYENVFLNTSIEGNVFIQEIWIKYI EEEEEEEEEECCCCCCEEHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA