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The map label for this gene is grdC

Identifier: 170757073

GI number: 170757073

Start: 1392667

End: 1394205

Strand: Direct

Name: grdC

Synonym: CLD_3304

Alternate gene names: 170757073

Gene position: 1392667-1394205 (Clockwise)

Preceding gene: 170757860

Following gene: 170755841

Centisome position: 35.18

GC content: 34.18

Gene sequence:

>1539_bases
ATGAATTATCCAGTAATAAAAGGAGCATCATATATTTTGGCTCATACTCCAGATATGGTACTTCATAATGGAACTACTCA
GACTACAGAGAAAGTAGTTAATCCAAATTCTGAATATCTTGAGGAACTTCCTAAGCATTTAAGAAATTTTGAAGATGTTT
TAAATTATGCACCTAACCAAACTTATATAGGAAACATGACCCCGGATCAGCTAGGTGAAATAGAAATGCCTTGGTGGGAT
AAAAAAATAGAAGAGAGCAGTAGATTTGGTAAGTTAGGCGAAATAATGCCTCAAGATGAATTTATAGGACTTATGGAAAT
ATGTGATGTATTCGATTTAGTTTTATTAGAAAAATCTTTTGTGGATAATGTAAAAATTAAATTGGAAAAGCATCCACTCA
TAGATGAAAACATGATTTCTAAAATAAAAGAGGGAGTGGCTATAGAGGAAATCAAAAAAATTGTAGATGAAGAAGGAGGA
GAAGGCCTATATAATGAAGGTACATTAGTAGGTTGCGTAAAAAAAGCTCATGATGTAGATGCGAATTTAAGTGCTCATAC
TATGCTAGAAAATTTGGTGGTAAAAGCTTCTGGTGTATTATCCTTATTAAATCTTATAGCTAAAAATAACATAGATCCAA
ATTCCATAGATTATGTTATAGAATGCTCTGAAGAAGCGTGTGGAGACATGAATCAAAGGGGAGGAGGAAACTTTGCAAAA
TCTCTTGCAGAAGTAGCGGGATTTACTAATGCTACAGGAGCGGATATGAGAGGATTTTGTGCAGGACCGAGCCATTCTCT
AATAGCTGCTTCAGCTTTAGTTCAATCCGGAGTATATGATAATGTAGTTATAGCTGGCGGAGGGGCAAGCGCTAAGTTAG
GTATGAACGGAAAGGACCATGTAAAAAAAGAAATGCCTATACTAGAGGATTGCTTAGGCGGATTTGCTGTATTAGTAAGT
AAAAATGATGGGATAAATCCAATACTTAGAACGGATCTAGTAGGAAAACATACTGTAGGAACAGGATCATCTCCACAGGC
AGTAATAAGTTCTTTAGTTACAGATCCATTAGATAAAGCAGGATTAAAAATAACTGATGTGGATAAATATTCCGTAGAAA
TGCAAAATCCAGATATAACAAAACCAGCAGGAGCAGGGGATGTACCACAAGCAAACTATAAAATGATAGGTGCTCTAGGA
GTTAAGAAAAAACATATAGAAAAGAAAGAATTAAAAGATTTTATACAAAATCATGGTATGTCAGGTTGGGCACCAACGCA
AGGCCATATTCCGTCTGGAGTACCTTATATAGGTTTTGCTAGAAATGATTTAACAGAAGGTAATTTAAATAGGGTTATGG
TAGTAGGAAAAGGTAGTTTATTCCTAGGACGTATGACAAATTTATTTGATGGAGTATCTATAATTATAGAAAGAAATACA
GGATATAAAGAAGAGGAAAAAGGAATTTCTGAGGATAAAGTGAGAAAAATAATTGCAGAATCCATAAAAAAATTAGCATC
ACAGCTAGTAGAAGAATAA

Upstream 100 bases:

>100_bases
GATTAAAACAGGGAAAGTAGATAAATAAAGAATTATAAAATTAAGGAGGCTGTACTATAGGTTTATAATTCAGCCTCCTA
AATATTAGGGGGGAAAAGCT

Downstream 100 bases:

>100_bases
GGGGTGATGTATAGTATGGATAATAAAGAAGTGAATAAAATAATAGGAAAAACTCTTCTTGATATTGCAGAATCTATAGA
AAAGGGAGACTTTAGTAGAA

Product: glycine reductase complex component C, beta subunit

Products: NA

Alternate protein names: Protein PC beta [H]

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MNYPVIKGASYILAHTPDMVLHNGTTQTTEKVVNPNSEYLEELPKHLRNFEDVLNYAPNQTYIGNMTPDQLGEIEMPWWD
KKIEESSRFGKLGEIMPQDEFIGLMEICDVFDLVLLEKSFVDNVKIKLEKHPLIDENMISKIKEGVAIEEIKKIVDEEGG
EGLYNEGTLVGCVKKAHDVDANLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDHVKKEMPILEDCLGGFAVLVS
KNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKAGLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALG
VKKKHIEKKELKDFIQNHGMSGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE

Sequences:

>Translated_512_residues
MNYPVIKGASYILAHTPDMVLHNGTTQTTEKVVNPNSEYLEELPKHLRNFEDVLNYAPNQTYIGNMTPDQLGEIEMPWWD
KKIEESSRFGKLGEIMPQDEFIGLMEICDVFDLVLLEKSFVDNVKIKLEKHPLIDENMISKIKEGVAIEEIKKIVDEEGG
EGLYNEGTLVGCVKKAHDVDANLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDHVKKEMPILEDCLGGFAVLVS
KNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKAGLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALG
VKKKHIEKKELKDFIQNHGMSGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE
>Mature_512_residues
MNYPVIKGASYILAHTPDMVLHNGTTQTTEKVVNPNSEYLEELPKHLRNFEDVLNYAPNQTYIGNMTPDQLGEIEMPWWD
KKIEESSRFGKLGEIMPQDEFIGLMEICDVFDLVLLEKSFVDNVKIKLEKHPLIDENMISKIKEGVAIEEIKKIVDEEGG
EGLYNEGTLVGCVKKAHDVDANLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDHVKKEMPILEDCLGGFAVLVS
KNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKAGLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALG
VKKKHIEKKELKDFIQNHGMSGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE

Specific function: In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a c

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013751
- InterPro:   IPR017236
- InterPro:   IPR016039
- InterPro:   IPR016038 [H]

Pfam domain/function: PF08545 ACP_syn_III [H]

EC number: =1.21.4.2; =1.21.4.3; =1.21.4.4 [H]

Molecular weight: Translated: 55554; Mature: 55554

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPVIKGASYILAHTPDMVLHNGTTQTTEKVVNPNSEYLEELPKHLRNFEDVLNYAPNQ
CCCCCCCCCCEEEECCCCCEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
TYIGNMTPDQLGEIEMPWWDKKIEESSRFGKLGEIMPQDEFIGLMEICDVFDLVLLEKSF
CEECCCCHHHCCCCCCCCCHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
VDNVKIKLEKHPLIDENMISKIKEGVAIEEIKKIVDEEGGEGLYNEGTLVGCVKKAHDVD
HCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHCCC
ANLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHCCCCCCCCCCHHHH
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDH
HHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEECCCCHHH
VKKEMPILEDCLGGFAVLVSKNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKA
HHHHCCHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHC
GLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALGVKKKHIEKKELKDFIQNHGM
CCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEEHHCCHHHHCCHHHHHHHHHHCCC
SGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEECCC
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNYPVIKGASYILAHTPDMVLHNGTTQTTEKVVNPNSEYLEELPKHLRNFEDVLNYAPNQ
CCCCCCCCCCEEEECCCCCEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
TYIGNMTPDQLGEIEMPWWDKKIEESSRFGKLGEIMPQDEFIGLMEICDVFDLVLLEKSF
CEECCCCHHHCCCCCCCCCHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
VDNVKIKLEKHPLIDENMISKIKEGVAIEEIKKIVDEEGGEGLYNEGTLVGCVKKAHDVD
HCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHCCC
ANLSAHTMLENLVVKASGVLSLLNLIAKNNIDPNSIDYVIECSEEACGDMNQRGGGNFAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHCCCCCCCCCCHHHH
SLAEVAGFTNATGADMRGFCAGPSHSLIAASALVQSGVYDNVVIAGGGASAKLGMNGKDH
HHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEECCCCHHH
VKKEMPILEDCLGGFAVLVSKNDGINPILRTDLVGKHTVGTGSSPQAVISSLVTDPLDKA
HHHHCCHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHC
GLKITDVDKYSVEMQNPDITKPAGAGDVPQANYKMIGALGVKKKHIEKKELKDFIQNHGM
CCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEEHHCCHHHHCCHHHHHHHHHHCCC
SGWAPTQGHIPSGVPYIGFARNDLTEGNLNRVMVVGKGSLFLGRMTNLFDGVSIIIERNT
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEECCC
GYKEEEKGISEDKVRKIIAESIKKLASQLVEE
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8223622; 1587286 [H]