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The map label for this gene is grdD

Identifier: 170755841

GI number: 170755841

Start: 1394221

End: 1395387

Strand: Direct

Name: grdD

Synonym: CLD_3303

Alternate gene names: 170755841

Gene position: 1394221-1395387 (Clockwise)

Preceding gene: 170757073

Following gene: 170754808

Centisome position: 35.22

GC content: 32.13

Gene sequence:

>1167_bases
ATGGATAATAAAGAAGTGAATAAAATAATAGGAAAAACTCTTCTTGATATTGCAGAATCTATAGAAAAGGGAGACTTTAG
TAGAAAGATAGTAGTAGGAATTACTACTTTAGGTAGTGAACATGGAGTTGAAAATTTAGTAAAAGGTGCTGAAGTGGCTG
CTAAAAAACATAATGACATAAAGGTAGTTTTAATAGGACCTAAAGTGGATACAGAATTAGAAATAGTAGAAGCTAATGAA
GAAGATGAAATGTATAACAAAATGGAAGAATTATTAGATACAAAATATATAGATGCAGCAGTTACTATGCATTACAATTT
TCCTATAGGGGTATCAACTGTAGGAAAGGTAGTTACCCCAGCTGATGGGAAAGAGATGTTTTTAGCTACAACTACAGGAA
CAGCTTCTATGAATAGAACAGAAGCTATGATTAAAAATGCAGTATATGGAATAATAACAGCTAAAACTATGGGGATAAAA
GAGCCTAATGTAGGGATTTTAAATTTAGATGGAGCAAGACAAGTAGAGAAAGCATTAAAAGAATTAGATAAAAATGGTTA
TAAAATAAATTTTGCTAATTCTCTAAGAGCAGATGGTGGTTCAGTAATGAGAGGAAATGATCTTTTAAAAGGAACACCGG
ATGTTATGGTGACAGATACTCTTACAGGAAATCTTTTAATGAAAGTATTTTCTTCTTATACTACTGGAGGAAGTTATGAA
GGATTTGGCCATGGCTACGGACCAGGTATAGGAGAGGATTATGAAAGAAATATCCTAATTCTATCTAGGGCTTCAGGTGT
ACCAGTGGTAGCTAATGCTATAGAATATGCAAAGGATCTAGTTAAAGGTAATATAAATAAATTAATAAAAGAAGAGTTTA
AAAAGGCTAATGAGGCTAAATTAAAGGATATATTAATCTCTATAGAAAACAAAGAAGACAAAAAAATAAAAGATGAAGAA
GAAGTTCCAATGCCTACAAAGGAAATAGCTACAGCATCTATTAGTGGGATAGATGTAATGGATATAGAGGATGCTCAGAA
AACCCTTTGGAAAGAAGGTATATATGCAGAGGGCGGTATGGGATGCACAGGTCCTGTCATAAAAGTAAATGATAAAAATT
ACGATAAGGCTACAGAAATATTAACTGAAAAAGGTTTTATAGCTTAA

Upstream 100 bases:

>100_bases
GGAAAAAGGAATTTCTGAGGATAAAGTGAGAAAAATAATTGCAGAATCCATAAAAAAATTAGCATCACAGCTAGTAGAAG
AATAAGGGGTGATGTATAGT

Downstream 100 bases:

>100_bases
AAATAAACTATAAATATATTTGTGAAAATTAGAGTGGGTAGTCATCGGATAAAAATTTTAAAGGTGAATATGATATTAAA
ATAAAAAAGTCCATTTACAT

Product: glycine reductase complex component C, alpha subunit

Products: NA

Alternate protein names: Protein PC alpha [H]

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MDNKEVNKIIGKTLLDIAESIEKGDFSRKIVVGITTLGSEHGVENLVKGAEVAAKKHNDIKVVLIGPKVDTELEIVEANE
EDEMYNKMEELLDTKYIDAAVTMHYNFPIGVSTVGKVVTPADGKEMFLATTTGTASMNRTEAMIKNAVYGIITAKTMGIK
EPNVGILNLDGARQVEKALKELDKNGYKINFANSLRADGGSVMRGNDLLKGTPDVMVTDTLTGNLLMKVFSSYTTGGSYE
GFGHGYGPGIGEDYERNILILSRASGVPVVANAIEYAKDLVKGNINKLIKEEFKKANEAKLKDILISIENKEDKKIKDEE
EVPMPTKEIATASISGIDVMDIEDAQKTLWKEGIYAEGGMGCTGPVIKVNDKNYDKATEILTEKGFIA

Sequences:

>Translated_388_residues
MDNKEVNKIIGKTLLDIAESIEKGDFSRKIVVGITTLGSEHGVENLVKGAEVAAKKHNDIKVVLIGPKVDTELEIVEANE
EDEMYNKMEELLDTKYIDAAVTMHYNFPIGVSTVGKVVTPADGKEMFLATTTGTASMNRTEAMIKNAVYGIITAKTMGIK
EPNVGILNLDGARQVEKALKELDKNGYKINFANSLRADGGSVMRGNDLLKGTPDVMVTDTLTGNLLMKVFSSYTTGGSYE
GFGHGYGPGIGEDYERNILILSRASGVPVVANAIEYAKDLVKGNINKLIKEEFKKANEAKLKDILISIENKEDKKIKDEE
EVPMPTKEIATASISGIDVMDIEDAQKTLWKEGIYAEGGMGCTGPVIKVNDKNYDKATEILTEKGFIA
>Mature_388_residues
MDNKEVNKIIGKTLLDIAESIEKGDFSRKIVVGITTLGSEHGVENLVKGAEVAAKKHNDIKVVLIGPKVDTELEIVEANE
EDEMYNKMEELLDTKYIDAAVTMHYNFPIGVSTVGKVVTPADGKEMFLATTTGTASMNRTEAMIKNAVYGIITAKTMGIK
EPNVGILNLDGARQVEKALKELDKNGYKINFANSLRADGGSVMRGNDLLKGTPDVMVTDTLTGNLLMKVFSSYTTGGSYE
GFGHGYGPGIGEDYERNILILSRASGVPVVANAIEYAKDLVKGNINKLIKEEFKKANEAKLKDILISIENKEDKKIKDEE
EVPMPTKEIATASISGIDVMDIEDAQKTLWKEGIYAEGGMGCTGPVIKVNDKNYDKATEILTEKGFIA

Specific function: In the first step of glycine, betaine and sarcosine reductases, the substrate is bound to component PB via a Schiff base intermediate. Then the PB-activated substrate is nucleophilically attacked by the selenol anion of component PA to transform it to a c

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003664
- InterPro:   IPR012116 [H]

Pfam domain/function: PF02504 FA_synthesis [H]

EC number: =1.21.4.2; =1.21.4.3; =1.21.4.4 [H]

Molecular weight: Translated: 42181; Mature: 42181

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKEVNKIIGKTLLDIAESIEKGDFSRKIVVGITTLGSEHGVENLVKGAEVAAKKHNDI
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCE
KVVLIGPKVDTELEIVEANEEDEMYNKMEELLDTKYIDAAVTMHYNFPIGVSTVGKVVTP
EEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCHHHHCCEECC
ADGKEMFLATTTGTASMNRTEAMIKNAVYGIITAKTMGIKEPNVGILNLDGARQVEKALK
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEEECCCHHHHHHHHH
ELDKNGYKINFANSLRADGGSVMRGNDLLKGTPDVMVTDTLTGNLLMKVFSSYTTGGSYE
HHCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCC
GFGHGYGPGIGEDYERNILILSRASGVPVVANAIEYAKDLVKGNINKLIKEEFKKANEAK
CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHH
LKDILISIENKEDKKIKDEEEVPMPTKEIATASISGIDVMDIEDAQKTLWKEGIYAEGGM
HHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCC
GCTGPVIKVNDKNYDKATEILTEKGFIA
CCCCCEEEECCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MDNKEVNKIIGKTLLDIAESIEKGDFSRKIVVGITTLGSEHGVENLVKGAEVAAKKHNDI
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCE
KVVLIGPKVDTELEIVEANEEDEMYNKMEELLDTKYIDAAVTMHYNFPIGVSTVGKVVTP
EEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEEEEEEEECCCCHHHHCCEECC
ADGKEMFLATTTGTASMNRTEAMIKNAVYGIITAKTMGIKEPNVGILNLDGARQVEKALK
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEEECCCHHHHHHHHH
ELDKNGYKINFANSLRADGGSVMRGNDLLKGTPDVMVTDTLTGNLLMKVFSSYTTGGSYE
HHCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCC
GFGHGYGPGIGEDYERNILILSRASGVPVVANAIEYAKDLVKGNINKLIKEEFKKANEAK
CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHH
LKDILISIENKEDKKIKDEEEVPMPTKEIATASISGIDVMDIEDAQKTLWKEGIYAEGGM
HHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCC
GCTGPVIKVNDKNYDKATEILTEKGFIA
CCCCCEEEECCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11737196; 1587286 [H]