Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 170756921

GI number: 170756921

Start: 1139174

End: 1139959

Strand: Direct

Name: rpoE [C]

Synonym: CLD_3538

Alternate gene names: 170756921

Gene position: 1139174-1139959 (Clockwise)

Preceding gene: 170757771

Following gene: 170755634

Centisome position: 28.78

GC content: 27.48

Gene sequence:

>786_bases
ATGGATATTGAAAGAATTATAAATACATATGGGAGTTATGTTTTTAACTATGCTCTAAAATTATCTTGTAATCCCTCTGT
TGCAGAGGACTTGACACAAGAAACATTTATTAATGCGTGGAAAAAGATCAATACTTTAGAAGATTCTAATGTGATTAAGT
CATGGCTTAAAAAAATATGTTTTAATAATTTTCTAATGTATGAAAGAAAAAATAAAAATTATACTGAATTACTTTATGAT
GATATTAATATTCTTGAAAAAGAAGGAAACTTATTAAAATACAATCCTCCCCAACCTGAAGATGAAGTAATTGTAGAAGA
AGCTATTAGAGAGTTACAGAATGGTTGTTTTCTAGCTATGGTAAGATATTTAACCTTACATCAACGAATAGCATTTTCAC
TAATTGATATGTTTGGACTATCTTTAGATGAAGTTTCAAGCCTAATTGGCATTTCCAAGAGTGCAACAAAAGGACTGCTT
TATCGCGCTCATATGAATTTAGACTCATTTTTTTATAAGCACTGCAATATCTTGGATGTAGATAATCCTTGTAGCTGTAG
AGCTTGGATTGAGTTTTCTAAAAAAAGAAATGATTTACAAAAGAATTCTAATGAACATAAATTAGTTACAAATCTAGATT
ATAAAAAATCAAACTATATATTTAATGATGAAGTTCGCGGAAAGATCAATTTTTTATATAAAAATATGCCTGATAGGAAA
CCTTCAGAAAAGTGGTATCAAGAGGTTGTTGATATAATAAATGAAATGTATGTTAATAAAAATTAG

Upstream 100 bases:

>100_bases
GTAAATTAATAGAAATTGCATTAAAAAATTCTGATAATTGGAAATGAGTTACAGAATGGATTTATAATTTTACTAAAAAT
CATAGAAATGAGGTGAGCTA

Downstream 100 bases:

>100_bases
ATAAAATTATTTATAAAACGTGACTTTCCTCTTTTTATTGCATCTATATAAGTGAAAGAAAATATTTTTATGTTATAAGA
GGAGGAATGGTTATGAATAA

Product: sigma-70 family RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Subunit; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MDIERIINTYGSYVFNYALKLSCNPSVAEDLTQETFINAWKKINTLEDSNVIKSWLKKICFNNFLMYERKNKNYTELLYD
DINILEKEGNLLKYNPPQPEDEVIVEEAIRELQNGCFLAMVRYLTLHQRIAFSLIDMFGLSLDEVSSLIGISKSATKGLL
YRAHMNLDSFFYKHCNILDVDNPCSCRAWIEFSKKRNDLQKNSNEHKLVTNLDYKKSNYIFNDEVRGKINFLYKNMPDRK
PSEKWYQEVVDIINEMYVNKN

Sequences:

>Translated_261_residues
MDIERIINTYGSYVFNYALKLSCNPSVAEDLTQETFINAWKKINTLEDSNVIKSWLKKICFNNFLMYERKNKNYTELLYD
DINILEKEGNLLKYNPPQPEDEVIVEEAIRELQNGCFLAMVRYLTLHQRIAFSLIDMFGLSLDEVSSLIGISKSATKGLL
YRAHMNLDSFFYKHCNILDVDNPCSCRAWIEFSKKRNDLQKNSNEHKLVTNLDYKKSNYIFNDEVRGKINFLYKNMPDRK
PSEKWYQEVVDIINEMYVNKN
>Mature_261_residues
MDIERIINTYGSYVFNYALKLSCNPSVAEDLTQETFINAWKKINTLEDSNVIKSWLKKICFNNFLMYERKNKNYTELLYD
DINILEKEGNLLKYNPPQPEDEVIVEEAIRELQNGCFLAMVRYLTLHQRIAFSLIDMFGLSLDEVSSLIGISKSATKGLL
YRAHMNLDSFFYKHCNILDVDNPCSCRAWIEFSKKRNDLQKNSNEHKLVTNLDYKKSNYIFNDEVRGKINFLYKNMPDRK
PSEKWYQEVVDIINEMYVNKN

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30817; Mature: 30817

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIERIINTYGSYVFNYALKLSCNPSVAEDLTQETFINAWKKINTLEDSNVIKSWLKKIC
CCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FNNFLMYERKNKNYTELLYDDINILEKEGNLLKYNPPQPEDEVIVEEAIRELQNGCFLAM
HHHHHEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCHHHHH
VRYLTLHQRIAFSLIDMFGLSLDEVSSLIGISKSATKGLLYRAHMNLDSFFYKHCNILDV
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHEEEECCCHHHHHHHCCCEEEC
DNPCSCRAWIEFSKKRNDLQKNSNEHKLVTNLDYKKSNYIFNDEVRGKINFLYKNMPDRK
CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCCCHHEEHCCCCCCCC
PSEKWYQEVVDIINEMYVNKN
CHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDIERIINTYGSYVFNYALKLSCNPSVAEDLTQETFINAWKKINTLEDSNVIKSWLKKIC
CCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FNNFLMYERKNKNYTELLYDDINILEKEGNLLKYNPPQPEDEVIVEEAIRELQNGCFLAM
HHHHHEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCHHHHH
VRYLTLHQRIAFSLIDMFGLSLDEVSSLIGISKSATKGLLYRAHMNLDSFFYKHCNILDV
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHEEEECCCHHHHHHHCCCEEEC
DNPCSCRAWIEFSKKRNDLQKNSNEHKLVTNLDYKKSNYIFNDEVRGKINFLYKNMPDRK
CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCCCHHEEHCCCCCCCC
PSEKWYQEVVDIINEMYVNKN
CHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA