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The map label for this gene is ydeL [H]

Identifier: 170756624

GI number: 170756624

Start: 760592

End: 762001

Strand: Reverse

Name: ydeL [H]

Synonym: CLD_0119

Alternate gene names: 170756624

Gene position: 762001-760592 (Counterclockwise)

Preceding gene: 170754755

Following gene: 170757241

Centisome position: 19.25

GC content: 45.6

Gene sequence:

>1410_bases
ATGCTGTACATTGACCGTGGGAGCAATATGCCGATATATCAGCAAATTTATGAACAAATGAAGCGGGACATTATAAGCGG
AAATTTACCTGTGGAATCACGCGTCATCTCCACACGAGTACTGGCCAGCGAATTGCAGGTCGGTAGAAACTCGGTAGAAA
ATGCCTATGATCAACTTAGGTTGGAAGGATATATCACGAGTATACCGGGGTCTGGGTATATCGTGAACAAGTTGGAGTTT
GATTTGATTCAGGAATCACCCAAGGAGCAACGGCAAAGTAAGCTGTTGACGGAACATCTCGCCGTGCTCCCCGATAAAAT
CAAATACAGCTTTCAATATGGCGAGCTTGATGAAACCAATTTTCCAAAGAAGCTCTGGCGGACGTATGTGGCAAACGTTC
TGGATGAACCGCTGGCACATTCAATGCACAGTTGCGGAGATGGGAAAGGTGATCCTCAGTTGCGCCAGCAGATAAAGCAA
TATCTTTATCACAGCCGGGGAGTACAATGCGAAACAGAACAGATTATCCTTTGCAGCGGTACGCAGTCTGCATTGGAGAC
CATTATAAGAATTTTTTCGGGCAAGAAAACCGTAGCGATGGAAGAACCATGTTATGACGGTGCAAGAGCAGTATTTCAAA
GCAACGGCTTTAAAATATTGCCTGTTCCGGTTCGTGAAGACGGCATTGATTTACAAAAACTTTCGTCACAATCGATTCCA
ATGGTTTATCTCTCTCCCTCACACCAGTTCCCGACAGGCGCGGTTATGCCTATTCATAACCGAATGGAGGTATTAAATCT
TGCACGCCAGCGAGACATGATGATTATTGAGGATGACTACGACAGCGAGTTTCGGTACAAGGGAAGACCCATTCCGTCAC
TGCAATCTATCGATCAAGCTGGGCGCGTGATCTATGTTGGGACTTTTTCTAAGGCTTTATCACCGGGGCTGCGAATATCC
TACTTGGTGTTGCCAACTTGGCTATTAGCTGCTTATCAGGAGAAATACAGAGGGTATCAATGCACGATTCCGCTGATTGA
GCAAAAGGTACTCCTGCATTTCATGCAAGACGGTCATTGGGAAAAACATATCCGCAGAGTTTGCCTGAGTCAGAAAAGAA
AGCATGATACCCTGATTGCCGCTATCCAGCAGATCATAGGCGACCGAGTTCGGGTTTACGGTCATCATGCCGGATTGCAC
ATATTACTTGAGTTTGTGGATGGACAGCAAGAGGACACTCTTGTACAAAAAACTATGCGGTATGGTGTTCAGGTGCGCCC
GGTATCTCCATTCTGGCTGGAAAAAGGCCGTTATTCGGGCAATGCTGTCGTGCTGGGATATGGAAAGATAAAAGAAAAAG
ATATTGTACCTGCAGTAGAACTTTTAAACAAGGCATGGTTTGAAGAGTGA

Upstream 100 bases:

>100_bases
TAAGTGTCTTATAGCATAGAGACGATTTAGAACATTTTATAGAATACGGTTGTTTTAAATTGTGTTATAATAATAGAAAA
AATTGTGAGGAGGGTGAAAT

Downstream 100 bases:

>100_bases
ATAGAACCGCATACACCGGGGTTTTTATAACTGAAACTTTTAAAACAGAAGCTTGCTGTACCTCGAATTGAATATCCAAA
ATTGAGAAGAAAGTTACCAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MLYIDRGSNMPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLRLEGYITSIPGSGYIVNKLEF
DLIQESPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETNFPKKLWRTYVANVLDEPLAHSMHSCGDGKGDPQLRQQIKQ
YLYHSRGVQCETEQIILCSGTQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
MVYLSPSHQFPTGAVMPIHNRMEVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQAGRVIYVGTFSKALSPGLRIS
YLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHWEKHIRRVCLSQKRKHDTLIAAIQQIIGDRVRVYGHHAGLH
ILLEFVDGQQEDTLVQKTMRYGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE

Sequences:

>Translated_469_residues
MLYIDRGSNMPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLRLEGYITSIPGSGYIVNKLEF
DLIQESPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETNFPKKLWRTYVANVLDEPLAHSMHSCGDGKGDPQLRQQIKQ
YLYHSRGVQCETEQIILCSGTQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
MVYLSPSHQFPTGAVMPIHNRMEVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQAGRVIYVGTFSKALSPGLRIS
YLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHWEKHIRRVCLSQKRKHDTLIAAIQQIIGDRVRVYGHHAGLH
ILLEFVDGQQEDTLVQKTMRYGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE
>Mature_469_residues
MLYIDRGSNMPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLRLEGYITSIPGSGYIVNKLEF
DLIQESPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETNFPKKLWRTYVANVLDEPLAHSMHSCGDGKGDPQLRQQIKQ
YLYHSRGVQCETEQIILCSGTQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
MVYLSPSHQFPTGAVMPIHNRMEVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQAGRVIYVGTFSKALSPGLRIS
YLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHWEKHIRRVCLSQKRKHDTLIAAIQQIIGDRVRVYGHHAGLH
ILLEFVDGQQEDTLVQKTMRYGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=289, Percent_Identity=25.2595155709343, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI33469970, Length=289, Percent_Identity=25.2595155709343, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1790797, Length=439, Percent_Identity=24.8291571753986, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787710, Length=439, Percent_Identity=23.4624145785877, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6321236, Length=232, Percent_Identity=24.5689655172414, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53741; Mature: 53741

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYIDRGSNMPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLR
CEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LEGYITSIPGSGYIVNKLEFDLIQESPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETN
EEEEEEECCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCC
FPKKLWRTYVANVLDEPLAHSMHSCGDGKGDPQLRQQIKQYLYHSRGVQCETEQIILCSG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
TQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCC
MVYLSPSHQFPTGAVMPIHNRMEVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQA
EEEECCCCCCCCCCEECCHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCCCHHHHHHC
GRVIYVGTFSKALSPGLRISYLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHW
CCEEEEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCH
EKHIRRVCLSQKRKHDTLIAAIQQIIGDRVRVYGHHAGLHILLEFVDGQQEDTLVQKTMR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHH
YGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE
CCEEEECCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYIDRGSNMPIYQQIYEQMKRDIISGNLPVESRVISTRVLASELQVGRNSVENAYDQLR
CEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LEGYITSIPGSGYIVNKLEFDLIQESPKEQRQSKLLTEHLAVLPDKIKYSFQYGELDETN
EEEEEEECCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCCC
FPKKLWRTYVANVLDEPLAHSMHSCGDGKGDPQLRQQIKQYLYHSRGVQCETEQIILCSG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
TQSALETIIRIFSGKKTVAMEEPCYDGARAVFQSNGFKILPVPVREDGIDLQKLSSQSIP
CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCCC
MVYLSPSHQFPTGAVMPIHNRMEVLNLARQRDMMIIEDDYDSEFRYKGRPIPSLQSIDQA
EEEECCCCCCCCCCEECCHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCCCHHHHHHC
GRVIYVGTFSKALSPGLRISYLVLPTWLLAAYQEKYRGYQCTIPLIEQKVLLHFMQDGHW
CCEEEEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHCCCH
EKHIRRVCLSQKRKHDTLIAAIQQIIGDRVRVYGHHAGLHILLEFVDGQQEDTLVQKTMR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHH
YGVQVRPVSPFWLEKGRYSGNAVVLGYGKIKEKDIVPAVELLNKAWFEE
CCEEEECCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]