| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is gamP [H]
Identifier: 170756387
GI number: 170756387
Start: 2923624
End: 2925579
Strand: Reverse
Name: gamP [H]
Synonym: CLD_1820
Alternate gene names: 170756387
Gene position: 2925579-2923624 (Counterclockwise)
Preceding gene: 170755394
Following gene: 170756740
Centisome position: 73.91
GC content: 29.81
Gene sequence:
>1956_bases TTGAAAAATATTTTAACTATTCTTCAGAGGGTAGGAAAATCCTTAATGCTACCTGTATCCGTATTACCTGCAGCAGCTAT ACTTTTAAGATTAGGCTATCCAGATCTTTTAAATAATATGTATATGTTAAAAGCGGGAGATGCTATATTTAGCAATCTTC CATTAATATTTGCTATAGGAGTTTCAGTAGGTCTTTCAGATGGGGAAGGAATAGCAGCTTTAGCTGCTATAGTAGGCCAA TTAATGTTGCAGGGTATATTGAATGTTGGAAGTTCAAAGGCAGCCAAAGAAGCAGCTATAAAAGTAGCTACCCAAAAGAA TATGACTTTAGAAGCTTTTATGAATAGCAAATTTTATGATGATATATTAAGAAGTACCAATATAGATTTAGGTGTTTTTG GTGGAATAATAATAGGCATTATAGCTGCAATTATATACAATAAATATAAAAACATAAAGCTACCCAGTACTATAGGTTTT TTTGGGGGAAAACGCTTTGTGCTTATTCTTACAGCTATAATATCCTTTATGTTTGGAATGATTAATGTGGTAATATGGCC AGAGGTACAAAAGAATATTGATACTTTTGCTAGATTTGCCACTACATCTCCTTTAGGACCAGCTTTTTATGCAGCAGGAA AAAGACTTTTAATTCCACTAGGACTTCATCATATATACTATCCACCTTTTTTATATCAATTTGGTAGTTATGTAGATCCT AGCGGAATTAAATATTTTGGGGATTTTTCAAGGTATTTTCATGGTGATCCTACAGCAGGAGTTTTTATGGCTTCAGAGTT TCCTATATTAATGTTTGGGCTTCCAGGAGCAGCTATAGCTATGATTTGTGCCGCAGAAAAACAAAATAGAAAGAAAGCTC TTAGCATAATGCTATCTGCTGCTTTAGTGTCTTTTTTTACAGGTATTACAGAACCTATAGAATTTGCTTTTATATTTGTA GCGCCTATATTATTTATTTTTCATGTTGCAGCAGCTTTTACAGCAGGTATAGTAACTAGTATTTTTAATATAAAACTAGG TTATACTTTTTCAGCTTCTTTTATAGATTATATTTTAGGATATAAGTTTTCTCAAAATGGGTTACTAATATTTCCTATAG GCATTTTTTATTTTTTGTTATATTTTATAGTGTTTTACTATCTAATAATAAAAAAAGATATAAAAACATTAGGAAGAGAA GGCATAATACTTAAAGAAAATAAAGAAATAAAAAGTAATGAAAAAGCAGCCCTAATATTAGAAGCTCTAGGAGGAGAAAA AAATATAATAAATTTAGATTGTTGTATAACAAGGCTTAGGGTAGCTTTAAAGGACGAAAGAAAATTAGATAGGGCTTATT TAGAAAAAATAAATTTATTAGGTATAGTGCAGACAGGAAAGGTGGTGCAAATAATATTAGGTACAGAAGCAGAAAATATA AAATATAGTATAGAGCAAATAATTAAAAAAGGAATGAATCCAAAGGAAATAATAGAATATGAAAGAGCATTAAAATTAAT GAATCCTATGGAAGGAGAAATAGTTGCCTTAGAAGAGGTGCCAGATGAGGTTTTCTCAGAAAAATTATTAGGCGATGGAT TTGCCATAAAGCCATATAGAAATAAGGTGTATTCTCCCGTGGACGGAATTATAAAATTTTTATTTCCTAGTAATCATGCC TTAGCTATAGAAACTGAGGAAGGTTTAGAGATTTTAATACATATAGGTATAGATACTGTAAACCTTAATGGGGAAGGATT TAAAGTTTATATAGAAGAAAAAGAAAAGGTTAAAAAGGGCCAACTTTTAGTAAGTTATGATAAAAAATTTTTAGGTAGAG AGGCTAAAAGTTTAATATCGCCTATAGTAATAACAAATTTAAAAGAAAGTTCAGAAGTAAAAATAGAATATGGTTATAAA AAAGAAAAAGAAATAGTAGCTTATATTAAGAATTAA
Upstream 100 bases:
>100_bases AGGATAGGGCAATATTAAGGTATATTAAATATATAAACTAAAAAACCTTGCTTTTGCAAGGTTTTTAAACTATAAGCAAG CTTAAAGGTGGTGTGTAAAA
Downstream 100 bases:
>100_bases TATGAAAATTGTTAATATTATAATGACTATAATAATTATTTTATAATTATTATCTACATTATTTATTAAGAATTACGAAA ATAATAAAAGAGTATGTTTA
Product: PTS system, glucose family, IIABC component
Products: NA
Alternate protein names: Glucosamine permease IIC component; PTS system glucosamine-specific EIIC component; Glucosamine-specific phosphotransferase enzyme IIB component; PTS system glucosamine-specific EIIB component; Glucosamine-specific phosphotransferase enzyme IIA component; PTS system glucosamine-specific EIIA component [H]
Number of amino acids: Translated: 651; Mature: 651
Protein sequence:
>651_residues MKNILTILQRVGKSLMLPVSVLPAAAILLRLGYPDLLNNMYMLKAGDAIFSNLPLIFAIGVSVGLSDGEGIAALAAIVGQ LMLQGILNVGSSKAAKEAAIKVATQKNMTLEAFMNSKFYDDILRSTNIDLGVFGGIIIGIIAAIIYNKYKNIKLPSTIGF FGGKRFVLILTAIISFMFGMINVVIWPEVQKNIDTFARFATTSPLGPAFYAAGKRLLIPLGLHHIYYPPFLYQFGSYVDP SGIKYFGDFSRYFHGDPTAGVFMASEFPILMFGLPGAAIAMICAAEKQNRKKALSIMLSAALVSFFTGITEPIEFAFIFV APILFIFHVAAAFTAGIVTSIFNIKLGYTFSASFIDYILGYKFSQNGLLIFPIGIFYFLLYFIVFYYLIIKKDIKTLGRE GIILKENKEIKSNEKAALILEALGGEKNIINLDCCITRLRVALKDERKLDRAYLEKINLLGIVQTGKVVQIILGTEAENI KYSIEQIIKKGMNPKEIIEYERALKLMNPMEGEIVALEEVPDEVFSEKLLGDGFAIKPYRNKVYSPVDGIIKFLFPSNHA LAIETEEGLEILIHIGIDTVNLNGEGFKVYIEEKEKVKKGQLLVSYDKKFLGREAKSLISPIVITNLKESSEVKIEYGYK KEKEIVAYIKN
Sequences:
>Translated_651_residues MKNILTILQRVGKSLMLPVSVLPAAAILLRLGYPDLLNNMYMLKAGDAIFSNLPLIFAIGVSVGLSDGEGIAALAAIVGQ LMLQGILNVGSSKAAKEAAIKVATQKNMTLEAFMNSKFYDDILRSTNIDLGVFGGIIIGIIAAIIYNKYKNIKLPSTIGF FGGKRFVLILTAIISFMFGMINVVIWPEVQKNIDTFARFATTSPLGPAFYAAGKRLLIPLGLHHIYYPPFLYQFGSYVDP SGIKYFGDFSRYFHGDPTAGVFMASEFPILMFGLPGAAIAMICAAEKQNRKKALSIMLSAALVSFFTGITEPIEFAFIFV APILFIFHVAAAFTAGIVTSIFNIKLGYTFSASFIDYILGYKFSQNGLLIFPIGIFYFLLYFIVFYYLIIKKDIKTLGRE GIILKENKEIKSNEKAALILEALGGEKNIINLDCCITRLRVALKDERKLDRAYLEKINLLGIVQTGKVVQIILGTEAENI KYSIEQIIKKGMNPKEIIEYERALKLMNPMEGEIVALEEVPDEVFSEKLLGDGFAIKPYRNKVYSPVDGIIKFLFPSNHA LAIETEEGLEILIHIGIDTVNLNGEGFKVYIEEKEKVKKGQLLVSYDKKFLGREAKSLISPIVITNLKESSEVKIEYGYK KEKEIVAYIKN >Mature_651_residues MKNILTILQRVGKSLMLPVSVLPAAAILLRLGYPDLLNNMYMLKAGDAIFSNLPLIFAIGVSVGLSDGEGIAALAAIVGQ LMLQGILNVGSSKAAKEAAIKVATQKNMTLEAFMNSKFYDDILRSTNIDLGVFGGIIIGIIAAIIYNKYKNIKLPSTIGF FGGKRFVLILTAIISFMFGMINVVIWPEVQKNIDTFARFATTSPLGPAFYAAGKRLLIPLGLHHIYYPPFLYQFGSYVDP SGIKYFGDFSRYFHGDPTAGVFMASEFPILMFGLPGAAIAMICAAEKQNRKKALSIMLSAALVSFFTGITEPIEFAFIFV APILFIFHVAAAFTAGIVTSIFNIKLGYTFSASFIDYILGYKFSQNGLLIFPIGIFYFLLYFIVFYYLIIKKDIKTLGRE GIILKENKEIKSNEKAALILEALGGEKNIINLDCCITRLRVALKDERKLDRAYLEKINLLGIVQTGKVVQIILGTEAENI KYSIEQIIKKGMNPKEIIEYERALKLMNPMEGEIVALEEVPDEVFSEKLLGDGFAIKPYRNKVYSPVDGIIKFLFPSNHA LAIETEEGLEILIHIGIDTVNLNGEGFKVYIEEKEKVKKGQLLVSYDKKFLGREAKSLISPIVITNLKESSEVKIEYGYK KEKEIVAYIKN
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG1263
COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIC type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786894, Length=674, Percent_Identity=36.7952522255193, Blast_Score=417, Evalue=1e-118, Organism=Escherichia coli, GI1787343, Length=498, Percent_Identity=41.7670682730924, Blast_Score=347, Evalue=1e-96, Organism=Escherichia coli, GI1787908, Length=515, Percent_Identity=29.3203883495146, Blast_Score=219, Evalue=3e-58, Organism=Escherichia coli, GI1788757, Length=131, Percent_Identity=48.0916030534351, Blast_Score=136, Evalue=3e-33, Organism=Escherichia coli, GI1790159, Length=138, Percent_Identity=40.5797101449275, Blast_Score=110, Evalue=4e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR018113 - InterPro: IPR001127 - InterPro: IPR001996 - InterPro: IPR003352 - InterPro: IPR013013 - InterPro: IPR011535 - InterPro: IPR011299 [H]
Pfam domain/function: PF00358 PTS_EIIA_1; PF00367 PTS_EIIB; PF02378 PTS_EIIC [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 72261; Mature: 72261
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: PS00371 PTS_EIIA_TYPE_1_HIS ; PS51093 PTS_EIIA_TYPE_1 ; PS01035 PTS_EIIB_TYPE_1_CYS ; PS51098 PTS_EIIB_TYPE_1 ; PS51103 PTS_EIIC_TYPE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNILTILQRVGKSLMLPVSVLPAAAILLRLGYPDLLNNMYMLKAGDAIFSNLPLIFAIG CCHHHHHHHHHCHHHCCHHHHHHHHHHHHHCCCHHHHCCEEEEEECCHHHHCCCEEEEEE VSVGLSDGEGIAALAAIVGQLMLQGILNVGSSKAAKEAAIKVATQKNMTLEAFMNSKFYD CCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCHHHHHCCHHHH DILRSTNIDLGVFGGIIIGIIAAIIYNKYKNIKLPSTIGFFGGKRFVLILTAIISFMFGM HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHH INVVIWPEVQKNIDTFARFATTSPLGPAFYAAGKRLLIPLGLHHIYYPPFLYQFGSYVDP HHEEECCHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEECHHHHCCCHHHHHHCCCCCC SGIKYFGDFSRYFHGDPTAGVFMASEFPILMFGLPGAAIAMICAAEKQNRKKALSIMLSA CCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH ALVSFFTGITEPIEFAFIFVAPILFIFHVAAAFTAGIVTSIFNIKLGYTFSASFIDYILG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEECHHHHHHHHC YKFSQNGLLIFPIGIFYFLLYFIVFYYLIIKKDIKTLGREGIILKENKEIKSNEKAALIL CEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEE EALGGEKNIINLDCCITRLRVALKDERKLDRAYLEKINLLGIVQTGKVVQIILGTEAENI EECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCHH KYSIEQIIKKGMNPKEIIEYERALKLMNPMEGEIVALEEVPDEVFSEKLLGDGFAIKPYR HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHCCCEEECHHH NKVYSPVDGIIKFLFPSNHALAIETEEGLEILIHIGIDTVNLNGEGFKVYIEEKEKVKKG HCCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECEEEEEECCCCEEEEEECHHHHHHC QLLVSYDKKFLGREAKSLISPIVITNLKESSEVKIEYGYKKEKEIVAYIKN CEEEEHHHHHHHHHHHHHHCCHHEECCCCCCCEEEEECCCCCCCCEEEECC >Mature Secondary Structure MKNILTILQRVGKSLMLPVSVLPAAAILLRLGYPDLLNNMYMLKAGDAIFSNLPLIFAIG CCHHHHHHHHHCHHHCCHHHHHHHHHHHHHCCCHHHHCCEEEEEECCHHHHCCCEEEEEE VSVGLSDGEGIAALAAIVGQLMLQGILNVGSSKAAKEAAIKVATQKNMTLEAFMNSKFYD CCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCHHHHHCCHHHH DILRSTNIDLGVFGGIIIGIIAAIIYNKYKNIKLPSTIGFFGGKRFVLILTAIISFMFGM HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHH INVVIWPEVQKNIDTFARFATTSPLGPAFYAAGKRLLIPLGLHHIYYPPFLYQFGSYVDP HHEEECCHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEECHHHHCCCHHHHHHCCCCCC SGIKYFGDFSRYFHGDPTAGVFMASEFPILMFGLPGAAIAMICAAEKQNRKKALSIMLSA CCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH ALVSFFTGITEPIEFAFIFVAPILFIFHVAAAFTAGIVTSIFNIKLGYTFSASFIDYILG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEECHHHHHHHHC YKFSQNGLLIFPIGIFYFLLYFIVFYYLIIKKDIKTLGREGIILKENKEIKSNEKAALIL CEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEE EALGGEKNIINLDCCITRLRVALKDERKLDRAYLEKINLLGIVQTGKVVQIILGTEAENI EECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCHH KYSIEQIIKKGMNPKEIIEYERALKLMNPMEGEIVALEEVPDEVFSEKLLGDGFAIKPYR HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHCCCEEECHHH NKVYSPVDGIIKFLFPSNHALAIETEEGLEILIHIGIDTVNLNGEGFKVYIEEKEKVKKG HCCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEECEEEEEECCCCEEEEEECHHHHHHC QLLVSYDKKFLGREAKSLISPIVITNLKESSEVKIEYGYKKEKEIVAYIKN CEEEEHHHHHHHHHHHHHHCCHHEECCCCCCCEEEEECCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 7751298 [H]