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The map label for this gene is yfiK [H]

Identifier: 170756196

GI number: 170756196

Start: 1542391

End: 1543044

Strand: Direct

Name: yfiK [H]

Synonym: CLD_3159

Alternate gene names: 170756196

Gene position: 1542391-1543044 (Clockwise)

Preceding gene: 170757149

Following gene: 170756828

Centisome position: 38.97

GC content: 27.06

Gene sequence:

>654_bases
ATGAATAAAACTAATATTATAGTAGCAGATGATGAAAAATTAATAAGAGAAGGATTAAAAATAATTCTCTCTACCTACAA
TGATATTGAAGTTGTAGGTCTTGCCGGTGACGGGAGGGAAGCACTAAGTTTATGTAAAGAAAAAGATGTACAAGTAGTTT
TGATGGATATTAGAATGCCCAATTGTGATGGAGTATTAGGTACAAGAATCATAAAAGAACAGTTTCCACATATAAAGATA
TTAATATTAACTACATTCAATGATAAAGAATATATTCATGAAGCTTTAAAATTTGGAGCTTCAGGGTATTTACTAAAAGA
TAGTTCTAATGAATTAATCTATGAAGGCATAAAAGCCTGTGTAAAAGGAAATGTAGTGGTTCACCCCGATGTGGCTAACA
ATATAATACTTAATACTACTTATGAAAAAGAATTAAATGATGATGATATAAGTTTAAAATATAATTTGACGGAAAGAGAA
ATTAATATAATAAGACAAATAGCTAATGGATTTTCTAATAAAGAAATAGCAGAAGAAATATATCTTTCTGAAGGAACTAT
AAAAAACAATATAAGTACCATACTTTCCAAATTAGATTTGAGGGATAGGACACAAATAGCTATATTTGCTTTTAAAAATA
ATATAGTTAATTAA

Upstream 100 bases:

>100_bases
GATTTTTATTAAAAGTAGTATTATATCCACAAATTAATGAAACCTAATAATTTTCATTATAAAGCCCATGGAAAATTAAT
TTAATAAGGGGAAAAATAAA

Downstream 100 bases:

>100_bases
ATAATAAAGTCTAAGATTTGAAAGTTAGAATAAGAATAACTTAAATAGAATTTGTGACCCCTTACTAAATAGTTAGTGAC
TTAAGTCACTAATGTTAGTT

Product: LuxR family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMPNCDGVLGTRIIKEQFPHIKI
LILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDISLKYNLTERE
INIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN

Sequences:

>Translated_217_residues
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMPNCDGVLGTRIIKEQFPHIKI
LILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDISLKYNLTERE
INIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN
>Mature_217_residues
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMPNCDGVLGTRIIKEQFPHIKI
LILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDISLKYNLTERE
INIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=209, Percent_Identity=32.5358851674641, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788222, Length=213, Percent_Identity=29.5774647887324, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787473, Length=218, Percent_Identity=30.2752293577982, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI1786747, Length=210, Percent_Identity=26.1904761904762, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI1790102, Length=208, Percent_Identity=27.4038461538462, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1789937, Length=148, Percent_Identity=29.0540540540541, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788712, Length=213, Percent_Identity=27.2300469483568, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1788546, Length=201, Percent_Identity=25.8706467661692, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24474; Mature: 24474

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMP
CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEEEECC
NCDGVLGTRIIKEQFPHIKILILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKAC
CCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH
VKGNVVVHPDVANNIILNTTYEKELNDDDISLKYNLTEREINIIRQIANGFSNKEIAEEI
HCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHH
YLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN
HHCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGDGREALSLCKEKDVQVVLMDIRMP
CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEEEECC
NCDGVLGTRIIKEQFPHIKILILTTFNDKEYIHEALKFGASGYLLKDSSNELIYEGIKAC
CCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH
VKGNVVVHPDVANNIILNTTYEKELNDDDISLKYNLTEREINIIRQIANGFSNKEIAEEI
HCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHH
YLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNNIVN
HHCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]