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The map label for this gene is rnfA [H]

Identifier: 170756141

GI number: 170756141

Start: 459524

End: 460102

Strand: Direct

Name: rnfA [H]

Synonym: CLD_0379

Alternate gene names: 170756141

Gene position: 459524-460102 (Clockwise)

Preceding gene: 170757866

Following gene: 170755719

Centisome position: 11.61

GC content: 31.43

Gene sequence:

>579_bases
ATGAAAATATTTGCTTTGATTATATCAGCGTTATTTGTTAATAACTTCGTTTTATCAAGATTCTTAGGAATATGTTCTTT
CCTTGGTGTTTCAAAAAAAGTTGAAACTGCTACAGGGATGGGACTTGCAGTTACATTTGTTATGGCATTAGCATCACTTA
TATCTTATATAGTATATAATGCTATACTTGTACCACTTAACATAACTTACCTATATACTATAGCTTTTATATTAGTTATA
GCAGCACTAGTTCAATTTGTTGAAATGGTTATTAAAAAGAAAAGTCCAGGACTTTACAAAGCTCTAGGAATATTCTTACC
ACTTATAACTACAAACTGTGCTATATTAGGTGTGGTTATTATAAACATGAACGACAAACTTAATTTAATAGAATCACTAA
TATTTGGAACTTTCTCAGGAGTAGGATATATGCTTGCAATAGTTCTTTTAGCAGGTTTAAGAGAAAGAATGGAAGCATGC
GATAAAATGCCTAAAGCAATGGAAGGACTTCCAATATCATTAATTACAGCAGGACTTATGGCAATCGCATTTTTGGGGTT
CCAAGGACTACTACATTAG

Upstream 100 bases:

>100_bases
ATATTAATGGCAATAATCAATAATAGAAAATTAAAAAAAGCTAAATAACCAAGAGAAGGAATTTTAAATATCCTTATTAA
GAAGGAAGGGTGAAAAAAGT

Downstream 100 bases:

>100_bases
GAGGTGTAGATAGATGAATGAATTACTATTTCCTATATTAAGCTTAGGTGCGCTAGGTCTTTTATTCGGTGTTCTTTTAG
GATATGCATCTAAAAAATTC

Product: electron transport complex, RnfABCDGE type, A subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKIFALIISALFVNNFVLSRFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYNAILVPLNITYLYTIAFILVI
AALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGVVIINMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEAC
DKMPKAMEGLPISLITAGLMAIAFLGFQGLLH

Sequences:

>Translated_192_residues
MKIFALIISALFVNNFVLSRFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYNAILVPLNITYLYTIAFILVI
AALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGVVIINMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEAC
DKMPKAMEGLPISLITAGLMAIAFLGFQGLLH
>Mature_192_residues
MKIFALIISALFVNNFVLSRFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYNAILVPLNITYLYTIAFILVI
AALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGVVIINMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEAC
DKMPKAMEGLPISLITAGLMAIAFLGFQGLLH

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=187, Percent_Identity=56.1497326203209, Blast_Score=210, Evalue=6e-56,
Organism=Escherichia coli, GI1787919, Length=159, Percent_Identity=33.3333333333333, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20763; Mature: 20763

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFALIISALFVNNFVLSRFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
AILVPLNITYLYTIAFILVIAALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGVVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
INMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEACDKMPKAMEGLPISLITAGLM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AIAFLGFQGLLH
HHHHHHHHHHCC
>Mature Secondary Structure
MKIFALIISALFVNNFVLSRFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
AILVPLNITYLYTIAFILVIAALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGVVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
INMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEACDKMPKAMEGLPISLITAGLM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AIAFLGFQGLLH
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA