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The map label for this gene is rnfE [H]

Identifier: 170757866

GI number: 170757866

Start: 458869

End: 459471

Strand: Direct

Name: rnfE [H]

Synonym: CLD_0380

Alternate gene names: 170757866

Gene position: 458869-459471 (Clockwise)

Preceding gene: 170754230

Following gene: 170756141

Centisome position: 11.59

GC content: 32.67

Gene sequence:

>603_bases
ATGATGAGCGTTTTAGGAGAAAGATTAAAAAATGGAATTATAGACGAAAATGTTACCTTCGTCCAAGTTTTAGCAATGTG
TCCTACTTTGGCGGTAACATCAAGTGCTCAAAATGGTATAGGTATGGGTCTTGCGTCTACAGTAGTTCTTATGGGATCAA
ACTTAGTTATATCATTACTTAGAAAAGCAATACCAGAAAAAATTCGTATACCATCATTCATAGTAGTAATAGCAGGATTT
GTTACATTACTTCAATTTTTAATGCAAGGTTTCGTACCAGCATTATATCAATCATTAGGTATATTTATACCACTTATAGT
TGTTAACTGTGTTATCCTAGGAAGAGCGGAAGCTTATGCATCAAAAAATGGCCCAGTAGCTTCAATATTTGATGGATTAG
GTCAAGGTCTAGGATTTACATTATCATTAACAGTAATAGGAATGATAAGAGAGCTATTAGGAGCAGGACAATTATTTGGA
CATCAAATAATGCCATCTTCATTCCAACCAGCTTTAATAATGATACTTGCGCCAGGAGCATTCTTTACATTAGGAATATT
AATGGCAATAATCAATAATAGAAAATTAAAAAAAGCTAAATAA

Upstream 100 bases:

>100_bases
GTAGATGGTAAATCTGGAGCTACAACAAGCTTTAACACAGAAGACCCAAAAGTAAATAATTATGTTGTAAATTATGAAAA
AATGAATTAAAGGGGGATAA

Downstream 100 bases:

>100_bases
CCAAGAGAAGGAATTTTAAATATCCTTATTAAGAAGGAAGGGTGAAAAAAGTATGAAAATATTTGCTTTGATTATATCAG
CGTTATTTGTTAATAACTTC

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MMSVLGERLKNGIIDENVTFVQVLAMCPTLAVTSSAQNGIGMGLASTVVLMGSNLVISLLRKAIPEKIRIPSFIVVIAGF
VTLLQFLMQGFVPALYQSLGIFIPLIVVNCVILGRAEAYASKNGPVASIFDGLGQGLGFTLSLTVIGMIRELLGAGQLFG
HQIMPSSFQPALIMILAPGAFFTLGILMAIINNRKLKKAK

Sequences:

>Translated_200_residues
MMSVLGERLKNGIIDENVTFVQVLAMCPTLAVTSSAQNGIGMGLASTVVLMGSNLVISLLRKAIPEKIRIPSFIVVIAGF
VTLLQFLMQGFVPALYQSLGIFIPLIVVNCVILGRAEAYASKNGPVASIFDGLGQGLGFTLSLTVIGMIRELLGAGQLFG
HQIMPSSFQPALIMILAPGAFFTLGILMAIINNRKLKKAK
>Mature_200_residues
MMSVLGERLKNGIIDENVTFVQVLAMCPTLAVTSSAQNGIGMGLASTVVLMGSNLVISLLRKAIPEKIRIPSFIVVIAGF
VTLLQFLMQGFVPALYQSLGIFIPLIVVNCVILGRAEAYASKNGPVASIFDGLGQGLGFTLSLTVIGMIRELLGAGQLFG
HQIMPSSFQPALIMILAPGAFFTLGILMAIINNRKLKKAK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=212, Percent_Identity=42.9245283018868, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1787914, Length=173, Percent_Identity=29.4797687861272, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21235; Mature: 21235

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSVLGERLKNGIIDENVTFVQVLAMCPTLAVTSSAQNGIGMGLASTVVLMGSNLVISLL
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHH
RKAIPEKIRIPSFIVVIAGFVTLLQFLMQGFVPALYQSLGIFIPLIVVNCVILGRAEAYA
HHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKNGPVASIFDGLGQGLGFTLSLTVIGMIRELLGAGQLFGHQIMPSSFQPALIMILAPGA
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEECCHH
FFTLGILMAIINNRKLKKAK
HHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MMSVLGERLKNGIIDENVTFVQVLAMCPTLAVTSSAQNGIGMGLASTVVLMGSNLVISLL
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHH
RKAIPEKIRIPSFIVVIAGFVTLLQFLMQGFVPALYQSLGIFIPLIVVNCVILGRAEAYA
HHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKNGPVASIFDGLGQGLGFTLSLTVIGMIRELLGAGQLFGHQIMPSSFQPALIMILAPGA
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEECCHH
FFTLGILMAIINNRKLKKAK
HHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA