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The map label for this gene is licT [H]

Identifier: 170755991

GI number: 170755991

Start: 780577

End: 781416

Strand: Direct

Name: licT [H]

Synonym: CLD_0103

Alternate gene names: 170755991

Gene position: 780577-781416 (Clockwise)

Preceding gene: 170755197

Following gene: 170756573

Centisome position: 19.72

GC content: 22.74

Gene sequence:

>840_bases
ATGGTAATAAACAAGATTTTAAATAATAATGCTGTAATAACATTTGATGATAAAGGAAAAGAAATAATTATAATGGGCAA
AGGAATAGCCTATGGTAAGAGAAAAGGTGATTTTATCGAAGAAAATAAAATTACCAAAAAATTTATTTTAAGTTCTATGG
AATATTCTAATCATCTTGTTGATATTTTAAGTAGTATTCCTACAGAATATATTGAACTTTGCCATGATATTGTACAATAT
GCAAAACAGAAATTATCTATAGAACTTGATGATTCATTGTATATTTCTTTGATGGATCATATAACTACTAGTATTGAACG
ATATAATAAAGGAGTTATACTAAAGAATAAATTATTATGGGAAATAAAACATTTTTATAAAAACGAATATGAGATTGGAT
TATATGGAATTGATATTATTAAAAAAAATTATGGTTTGACTATGGATGAAGATGAAGCTGGATTTATAGCACTTCATATC
GTTAGTGCTGAAGTCAGCAATAATATTAAGGATGTATATGAGATAACTGGATTTATACAAAATATCACAAATATTATTAA
ATATTATTTTAACAGAGACTTTAATACAGAGTCATATAATTATTATCGGTTTATTACTCATTTAAAATTTTTTGGATATA
GAGTTTTTTCAAAAAAATCTGATAAAAATGATAGTATTAATAATAATCTGTTAGATATTATAAAAGAAGAATATAAGGAA
GCTTATTTATGCAGCTTGAAGATAAAACAATTCATTGAAAAAAAGTATTATTTTTATTTAAATGATGATGAGATTCTATA
TCTTACAATACATATTGCAAAGCTTATAAGTGATGAATAA

Upstream 100 bases:

>100_bases
GATATGGATTGTAATAGTGATTAGCTTGCTACACAAAACCTATTTACAGATATTTTGTTATGTCTGGAAATAGGTTTTTT
TGCTTTGGGGGAGGTTTTTT

Downstream 100 bases:

>100_bases
ATACAATTTATAGGAGTTTTATAATTAGTGATAATACTTATGTATTTCGCATACTTTCTATATTTTTTTACATAAGAGTT
AAATAATTTTTTAATAAATC

Product: BglG family transcriptional antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEENKITKKFILSSMEYSNHLVDILSSIPTEYIELCHDIVQY
AKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLWEIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHI
VSAEVSNNIKDVYEITGFIQNITNIIKYYFNRDFNTESYNYYRFITHLKFFGYRVFSKKSDKNDSINNNLLDIIKEEYKE
AYLCSLKIKQFIEKKYYFYLNDDEILYLTIHIAKLISDE

Sequences:

>Translated_279_residues
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEENKITKKFILSSMEYSNHLVDILSSIPTEYIELCHDIVQY
AKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLWEIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHI
VSAEVSNNIKDVYEITGFIQNITNIIKYYFNRDFNTESYNYYRFITHLKFFGYRVFSKKSDKNDSINNNLLDIIKEEYKE
AYLCSLKIKQFIEKKYYFYLNDDEILYLTIHIAKLISDE
>Mature_279_residues
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEENKITKKFILSSMEYSNHLVDILSSIPTEYIELCHDIVQY
AKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLWEIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHI
VSAEVSNNIKDVYEITGFIQNITNIIKYYFNRDFNTESYNYYRFITHLKFFGYRVFSKKSDKNDSINNNLLDIIKEEYKE
AYLCSLKIKQFIEKKYYFYLNDDEILYLTIHIAKLISDE

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=275, Percent_Identity=38.9090909090909, Blast_Score=224, Evalue=5e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32948; Mature: 32948

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEENKITKKFILSSMEYSNHLV
CCCHHEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DILSSIPTEYIELCHDIVQYAKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLW
HHHHHCCHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
EIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHIVSAEVSNNIKDVYEITGFIQ
HHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHH
NITNIIKYYFNRDFNTESYNYYRFITHLKFFGYRVFSKKSDKNDSINNNLLDIIKEEYKE
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHH
AYLCSLKIKQFIEKKYYFYLNDDEILYLTIHIAKLISDE
HHHHHHHHHHHHHHCEEEEECCCCEEEEEEEHHHHHCCC
>Mature Secondary Structure
MVINKILNNNAVITFDDKGKEIIIMGKGIAYGKRKGDFIEENKITKKFILSSMEYSNHLV
CCCHHEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DILSSIPTEYIELCHDIVQYAKQKLSIELDDSLYISLMDHITTSIERYNKGVILKNKLLW
HHHHHCCHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
EIKHFYKNEYEIGLYGIDIIKKNYGLTMDEDEAGFIALHIVSAEVSNNIKDVYEITGFIQ
HHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHH
NITNIIKYYFNRDFNTESYNYYRFITHLKFFGYRVFSKKSDKNDSINNNLLDIIKEEYKE
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHH
AYLCSLKIKQFIEKKYYFYLNDDEILYLTIHIAKLISDE
HHHHHHHHHHHHHHCEEEEECCCCEEEEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]