| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755908
Identifier: 170755908
GI number: 170755908
Start: 2167161
End: 2168441
Strand: Reverse
Name: 170755908
Synonym: CLD_2606
Alternate gene names: NA
Gene position: 2168441-2167161 (Counterclockwise)
Preceding gene: 170756302
Following gene: 170756143
Centisome position: 54.78
GC content: 29.59
Gene sequence:
>1281_bases TTGGAGAAAAGCAATTTAAAGTATGGCAATGAATATAAAAAAATACTATTTAAGCCTAGTCATAATGTAGGGATTCTAGA TAAAGAATTCTTATCCATAGAAAAGGAAGAGGAAGTTATAAAAAGGGCTCTCTTGAATCCTATAGGATCTAGAAGAATAA ATGAACTTATTACTCCGGAAGATAAGCTTTGCATTGTGATATCTGATGTAACGAGACTATGGCAAAAACCTAGGGTTTTT TTACCTATACTTATTGAAGAAATAAAAAAAAGTGGTATAAAGGATGAAAATATAATTTTCTTATGTGCCTTAGGTTCCCA TAGAAAACAAAGCAAAGAGGAACATATAAAGATTTTAGGGGAGAATTTATTTAAAAAATTTAAAATTATAGATCATTATT CCAAAACTAAAGATGAAATGGTGTATATAGGTGAAACCTCTTTTAAAACTCCTGTATTTGTTAATAAGCTAGTAAAAGAG TGTACTAAAGTAATTATTACAGGAGGTATAACCTTTCATGATATGGCAGGATTCGGAGGGGGAAGAAAATCTATTTTACC TGGCATAAGTTCCTACGAAACCATAATGGCAAATCATGCATTAGTTCTAAATCCTAATAAAAATGGCATAAATCCTAATT GTAGCTGCGGAAATTTAGAAAATAATCCTATGCATTTAGATATGATGGAGGCTTGTGATATGATAAAACCTTCATTTTTA TTAAATGTAATAATGGATTCTAAGGGTAATATTACTGAAGCAGTTGCAGGAAATTATGCAAAAGCCTTTGAAAGAGGGTG TGAACTTTTGCAAGAAAACAATGGTTTAAAAATTAAAAAATTGAAGGATACAGTGATTGTTTCTGCTGGAGGATTTCCAA AGGACATTAACTTGTATCAATCCTCTAAAGCATTAAGTAATGCAAAAGAAGCAGTTAAAAAAGGTGGAAAAATAATTCTT TTTACACAATGCATAGAGGGTATAGGAAATAAAGAAGTAGAGGAAATCATAAATAATTTTAATAACAATGAAGAAAGGGA AGAGGAATTAAGAAGAAAGTTTACTGTTTCAAAGTTTGCAGCCTACTTAATATGTAGTATTGCCAAAGAATATGAGCTTA TTCTTATATCCGATATAAAAGAAGAACTAGTTAGTAAAGCCGGAATTAGGGTATTTGAAGATGAGAGTATAATAAATGAA ATTTTAAAGGAAAATGAAGAAATATATCTGATGCCAGATGGTAGTAGTTTATTACCTAAATATTCTAATATACAAAAATA G
Upstream 100 bases:
>100_bases ACATGTATAAATATTCATTGTATAATTTTAAAAATTAACATATACAAACCAAAACAGGATAGATATATACATATAATTCT AGAGAAGTGGGGGTGTTTAT
Downstream 100 bases:
>100_bases TTAAAAATTTACATAAAATACAAATCATAATAAAAAATCCATATGCATAATTATACAGAAAATAATAAATAAGGAGTGAA TAGAAATGAGTAAAAAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 426; Mature: 426
Protein sequence:
>426_residues MEKSNLKYGNEYKKILFKPSHNVGILDKEFLSIEKEEEVIKRALLNPIGSRRINELITPEDKLCIVISDVTRLWQKPRVF LPILIEEIKKSGIKDENIIFLCALGSHRKQSKEEHIKILGENLFKKFKIIDHYSKTKDEMVYIGETSFKTPVFVNKLVKE CTKVIITGGITFHDMAGFGGGRKSILPGISSYETIMANHALVLNPNKNGINPNCSCGNLENNPMHLDMMEACDMIKPSFL LNVIMDSKGNITEAVAGNYAKAFERGCELLQENNGLKIKKLKDTVIVSAGGFPKDINLYQSSKALSNAKEAVKKGGKIIL FTQCIEGIGNKEVEEIINNFNNNEEREEELRRKFTVSKFAAYLICSIAKEYELILISDIKEELVSKAGIRVFEDESIINE ILKENEEIYLMPDGSSLLPKYSNIQK
Sequences:
>Translated_426_residues MEKSNLKYGNEYKKILFKPSHNVGILDKEFLSIEKEEEVIKRALLNPIGSRRINELITPEDKLCIVISDVTRLWQKPRVF LPILIEEIKKSGIKDENIIFLCALGSHRKQSKEEHIKILGENLFKKFKIIDHYSKTKDEMVYIGETSFKTPVFVNKLVKE CTKVIITGGITFHDMAGFGGGRKSILPGISSYETIMANHALVLNPNKNGINPNCSCGNLENNPMHLDMMEACDMIKPSFL LNVIMDSKGNITEAVAGNYAKAFERGCELLQENNGLKIKKLKDTVIVSAGGFPKDINLYQSSKALSNAKEAVKKGGKIIL FTQCIEGIGNKEVEEIINNFNNNEEREEELRRKFTVSKFAAYLICSIAKEYELILISDIKEELVSKAGIRVFEDESIINE ILKENEEIYLMPDGSSLLPKYSNIQK >Mature_426_residues MEKSNLKYGNEYKKILFKPSHNVGILDKEFLSIEKEEEVIKRALLNPIGSRRINELITPEDKLCIVISDVTRLWQKPRVF LPILIEEIKKSGIKDENIIFLCALGSHRKQSKEEHIKILGENLFKKFKIIDHYSKTKDEMVYIGETSFKTPVFVNKLVKE CTKVIITGGITFHDMAGFGGGRKSILPGISSYETIMANHALVLNPNKNGINPNCSCGNLENNPMHLDMMEACDMIKPSFL LNVIMDSKGNITEAVAGNYAKAFERGCELLQENNGLKIKKLKDTVIVSAGGFPKDINLYQSSKALSNAKEAVKKGGKIIL FTQCIEGIGNKEVEEIINNFNNNEEREEELRRKFTVSKFAAYLICSIAKEYELILISDIKEELVSKAGIRVFEDESIINE ILKENEEIYLMPDGSSLLPKYSNIQK
Specific function: Unknown
COG id: COG3875
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48118; Mature: 48118
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKSNLKYGNEYKKILFKPSHNVGILDKEFLSIEKEEEVIKRALLNPIGSRRINELITPE CCCCCCCCCCHHHHEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHCHHHHHHHHHHCCCC DKLCIVISDVTRLWQKPRVFLPILIEEIKKSGIKDENIIFLCALGSHRKQSKEEHIKILG CCEEEEEHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH ENLFKKFKIIDHYSKTKDEMVYIGETSFKTPVFVNKLVKECTKVIITGGITFHDMAGFGG HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHCCCCC GRKSILPGISSYETIMANHALVLNPNKNGINPNCSCGNLENNPMHLDMMEACDMIKPSFL CCHHHCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCHHHH LNVIMDSKGNITEAVAGNYAKAFERGCELLQENNGLKIKKLKDTVIVSAGGFPKDINLYQ HHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCCCHHHH SSKALSNAKEAVKKGGKIILFTQCIEGIGNKEVEEIINNFNNNEEREEELRRKFTVSKFA HHHHHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AYLICSIAKEYELILISDIKEELVSKAGIRVFEDESIINEILKENEEIYLMPDGSSLLPK HHHHHHHHHCCCEEEHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCEEEEEECCCCCCCC YSNIQK CCCCCC >Mature Secondary Structure MEKSNLKYGNEYKKILFKPSHNVGILDKEFLSIEKEEEVIKRALLNPIGSRRINELITPE CCCCCCCCCCHHHHEEECCCCCCCCCCHHHHCCCHHHHHHHHHHHCHHHHHHHHHHCCCC DKLCIVISDVTRLWQKPRVFLPILIEEIKKSGIKDENIIFLCALGSHRKQSKEEHIKILG CCEEEEEHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH ENLFKKFKIIDHYSKTKDEMVYIGETSFKTPVFVNKLVKECTKVIITGGITFHDMAGFGG HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHCCCCC GRKSILPGISSYETIMANHALVLNPNKNGINPNCSCGNLENNPMHLDMMEACDMIKPSFL CCHHHCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCHHHH LNVIMDSKGNITEAVAGNYAKAFERGCELLQENNGLKIKKLKDTVIVSAGGFPKDINLYQ HHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCCCHHHH SSKALSNAKEAVKKGGKIILFTQCIEGIGNKEVEEIINNFNNNEEREEELRRKFTVSKFA HHHHHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AYLICSIAKEYELILISDIKEELVSKAGIRVFEDESIINEILKENEEIYLMPDGSSLLPK HHHHHHHHHCCCEEEHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCEEEEEECCCCCCCC YSNIQK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA