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The map label for this gene is yxdJ [H]

Identifier: 170755846

GI number: 170755846

Start: 1558933

End: 1559634

Strand: Direct

Name: yxdJ [H]

Synonym: CLD_3144

Alternate gene names: 170755846

Gene position: 1558933-1559634 (Clockwise)

Preceding gene: 170754480

Following gene: 170756090

Centisome position: 39.38

GC content: 29.34

Gene sequence:

>702_bases
ATGAGTTATAAGATAATGATAATAGAAGATGATAAAAATATAGCAAGGCTTTTAGGTGAACATATAGAAAAATATGGATA
CGAAGCACTAGTAGCTAAAGATTTTAAAAAAATATTAGAAACCTTTGAAATAGAAAAACCAAATTTAATTCTTTTAGATA
TTAATTTGCCCAAGTTTGATGGATATTACTGGTGTAGACGAATAAGAGAAAAATCTTTATGTCCTATAATATTTATATCC
GCTAGAGATTCAGAAATGAACCAAGTTATGGCTATTGAAAGTGGAGCAGATGATTATATTACTAAGCCATTTTACTATGA
TGTAGTTTTAGCAAAAATAAAAAGTCAACTAAGAAGAGTATATGGGGATTATGCGGCCAATAGTCAAGTGGAAAGAATAT
TAGATGTAGAAGGATTACTTTTTTATCCGGAAAGGTTACAGGTACATTTTACTAGAAAGGAAACAATGCTTTCTAAAAAA
GAGGGAGACCTTTTAGATGCAATGATGAAAATATATCCTAGAGTAGCTACAAGAGAAGAACTTCTAGAAAAAATATGGGA
TGATACTACTTTTGTAGATGAAAATACATTAAATGTAAATATAGCAAGACTTAGAAAAAAGTTATTAGATTTAGGTATAA
AGGATTCTATAGAAACTGTAAGAGGAGCAGGATATAGATTGAATGTAACCTGGAGGAAGTAG

Upstream 100 bases:

>100_bases
TTAAATATAAGCATTTTAAAACATAAAACTTAAAAAGTTCATCTATAGATGAATTTAGTACAGGCTTTAATGTGTAAAAT
ATAAAACAGGAGTGATATAT

Downstream 100 bases:

>100_bases
GATGAAAATTTTTATAAAAAATAATAAGGGTGTTATAATATTATTTTTATTAAATTTTATGGTACTGTTTAGCTTATACA
ATCTAATGGGTGGATTTGAG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDINLPKFDGYYWCRRIREKSLCPIIFIS
ARDSEMNQVMAIESGADDYITKPFYYDVVLAKIKSQLRRVYGDYAANSQVERILDVEGLLFYPERLQVHFTRKETMLSKK
EGDLLDAMMKIYPRVATREELLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNVTWRK

Sequences:

>Translated_233_residues
MSYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDINLPKFDGYYWCRRIREKSLCPIIFIS
ARDSEMNQVMAIESGADDYITKPFYYDVVLAKIKSQLRRVYGDYAANSQVERILDVEGLLFYPERLQVHFTRKETMLSKK
EGDLLDAMMKIYPRVATREELLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNVTWRK
>Mature_232_residues
SYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDINLPKFDGYYWCRRIREKSLCPIIFISA
RDSEMNQVMAIESGADDYITKPFYYDVVLAKIKSQLRRVYGDYAANSQVERILDVEGLLFYPERLQVHFTRKETMLSKKE
GDLLDAMMKIYPRVATREELLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNVTWRK

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. Positively regulates the expression of the yxdLMyxeA operon by direct interaction with its promoter region. Could also indirectly regulate the expression of the dlt operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=232, Percent_Identity=31.8965517241379, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=33.7777777777778, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790860, Length=225, Percent_Identity=30.6666666666667, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1786911, Length=225, Percent_Identity=28.8888888888889, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI87082012, Length=222, Percent_Identity=31.5315315315315, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790552, Length=227, Percent_Identity=33.0396475770925, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=30.8370044052863, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1787375, Length=230, Percent_Identity=27.3913043478261, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=29.8245614035088, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=29.0748898678414, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI145693140, Length=228, Percent_Identity=31.140350877193, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789402, Length=228, Percent_Identity=29.8245614035088, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=28.82096069869, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790863, Length=240, Percent_Identity=27.9166666666667, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1788550, Length=141, Percent_Identity=26.9503546099291, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693157, Length=106, Percent_Identity=30.188679245283, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27407; Mature: 27276

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDINLPKFD
CCEEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
GYYWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYDVVLAKIKSQLRRV
HHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YGDYAANSQVERILDVEGLLFYPERLQVHFTRKETMLSKKEGDLLDAMMKIYPRVATREE
HHHHCCCHHHHHHHCCCCEEECCCCEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCHHH
LLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNVTWRK
HHHHHCCCCEEECCCCCEEEHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEEC
>Mature Secondary Structure 
SYKIMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDINLPKFD
CEEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
GYYWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYDVVLAKIKSQLRRV
HHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
YGDYAANSQVERILDVEGLLFYPERLQVHFTRKETMLSKKEGDLLDAMMKIYPRVATREE
HHHHCCCHHHHHHHCCCCEEECCCCEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCHHH
LLEKIWDDTTFVDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNVTWRK
HHHHHCCCCEEECCCCCEEEHHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377 [H]