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The map label for this gene is yxdK [H]

Identifier: 170756090

GI number: 170756090

Start: 1559636

End: 1560613

Strand: Direct

Name: yxdK [H]

Synonym: CLD_3143

Alternate gene names: 170756090

Gene position: 1559636-1560613 (Clockwise)

Preceding gene: 170755846

Following gene: 170756814

Centisome position: 39.4

GC content: 24.74

Gene sequence:

>978_bases
ATGAAAATTTTTATAAAAAATAATAAGGGTGTTATAATATTATTTTTATTAAATTTTATGGTACTGTTTAGCTTATACAA
TCTAATGGGTGGATTTGAGGACTTTAATAATTTCATTTATTTTATGTTATTAAGCATATTTAATTTATTAGTCTATCTAA
TATTAAAATACTTAAATGAAAGAAAAATGTATAAAAGTTTAGAGAAAAAACCGGAAGTATTTGAAGATTGTTTAAATTCT
TTTGGTGATTCTACCTTAGGAAAACATTTAAATGAATACACTGGAGAACTATATAGTATATATAAATTTCATATGCATGA
AAATATAAAAAAGCAAACAGAACATTTAAATTTTATAAATCAATGGGTGCATCAAATGAAAACACCTCTTTCTGTAATAA
AGCTAATAATTCAAGAAAATGGAGAACAACAGTTCATAAAAGATATCAAAGAAGAAACAGAAAAGTTAGAAGAGGGATTA
AATATCGCTCTTTACAATGCTAGGTTAGAAAATTTTCACAATGACTTTAATGTGGCAGAGTTCGATTTGAAAGAATTGGT
TTTAGATAGAGTTAACTATAATAAAAAATTGTTTATAAAAAATGGAGTTTTCCCAAAAGTAGAAATGAATAATATTAAAA
TTAAATCAGATAGAAAATGGATATCTTTTATATTAGATCAGATTATAATTAATGGTGTAAAATACTCAAAGGGAAAAGGA
AAACTGATAGAAATAAAAGCAGGAGAGCAGCAAAAAAGAAGTTATATATATATAAAAGATGAGGGTATTGGCATACCTAA
AAAAGATATAAATAGAGTAATGGAACCTTTTTATACAGGAGAAAATGGCAGGATCTTTGGGGAATCTACGGGTATGGGAC
TCTATATAACAAATGAAGTTTGTAAAAAATTAAACCATGAATTAGAAATACAGTCTAATGAAGGAGAAGGTACTAAGATT
ACAATATATTTTAATTAA

Upstream 100 bases:

>100_bases
GCAAGACTTAGAAAAAAGTTATTAGATTTAGGTATAAAGGATTCTATAGAAACTGTAAGAGGAGCAGGATATAGATTGAA
TGTAACCTGGAGGAAGTAGG

Downstream 100 bases:

>100_bases
TAGTAAAATAGTAGTTTAAAATAATAGTTTATTTAAAATAATTGATATTAGATCTGTTAGTTAGGAGAAATCTATTGGGA
TTATTGAATTAAAAGAAGTT

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKIFIKNNKGVIILFLLNFMVLFSLYNLMGGFEDFNNFIYFMLLSIFNLLVYLILKYLNERKMYKSLEKKPEVFEDCLNS
FGDSTLGKHLNEYTGELYSIYKFHMHENIKKQTEHLNFINQWVHQMKTPLSVIKLIIQENGEQQFIKDIKEETEKLEEGL
NIALYNARLENFHNDFNVAEFDLKELVLDRVNYNKKLFIKNGVFPKVEMNNIKIKSDRKWISFILDQIIINGVKYSKGKG
KLIEIKAGEQQKRSYIYIKDEGIGIPKKDINRVMEPFYTGENGRIFGESTGMGLYITNEVCKKLNHELEIQSNEGEGTKI
TIYFN

Sequences:

>Translated_325_residues
MKIFIKNNKGVIILFLLNFMVLFSLYNLMGGFEDFNNFIYFMLLSIFNLLVYLILKYLNERKMYKSLEKKPEVFEDCLNS
FGDSTLGKHLNEYTGELYSIYKFHMHENIKKQTEHLNFINQWVHQMKTPLSVIKLIIQENGEQQFIKDIKEETEKLEEGL
NIALYNARLENFHNDFNVAEFDLKELVLDRVNYNKKLFIKNGVFPKVEMNNIKIKSDRKWISFILDQIIINGVKYSKGKG
KLIEIKAGEQQKRSYIYIKDEGIGIPKKDINRVMEPFYTGENGRIFGESTGMGLYITNEVCKKLNHELEIQSNEGEGTKI
TIYFN
>Mature_325_residues
MKIFIKNNKGVIILFLLNFMVLFSLYNLMGGFEDFNNFIYFMLLSIFNLLVYLILKYLNERKMYKSLEKKPEVFEDCLNS
FGDSTLGKHLNEYTGELYSIYKFHMHENIKKQTEHLNFINQWVHQMKTPLSVIKLIIQENGEQQFIKDIKEETEKLEEGL
NIALYNARLENFHNDFNVAEFDLKELVLDRVNYNKKLFIKNGVFPKVEMNNIKIKSDRKWISFILDQIIINGVKYSKGKG
KLIEIKAGEQQKRSYIYIKDEGIGIPKKDINRVMEPFYTGENGRIFGESTGMGLYITNEVCKKLNHELEIQSNEGEGTKI
TIYFN

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. May activate yxdJ in response to the antibacterial protein LL-37 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789808, Length=294, Percent_Identity=21.7687074829932, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467 [H]

Pfam domain/function: PF02518 HATPase_c [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 38265; Mature: 38265

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFIKNNKGVIILFLLNFMVLFSLYNLMGGFEDFNNFIYFMLLSIFNLLVYLILKYLNE
CEEEEECCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKMYKSLEKKPEVFEDCLNSFGDSTLGKHLNEYTGELYSIYKFHMHENIKKQTEHLNFIN
HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWVHQMKTPLSVIKLIIQENGEQQFIKDIKEETEKLEEGLNIALYNARLENFHNDFNVAE
HHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCHHH
FDLKELVLDRVNYNKKLFIKNGVFPKVEMNNIKIKSDRKWISFILDQIIINGVKYSKGKG
HHHHHHHHHHHCCCCEEEEECCCCCCEEECCEEEECCHHHHHHHHHHHHHCCCCCCCCCC
KLIEIKAGEQQKRSYIYIKDEGIGIPKKDINRVMEPFYTGENGRIFGESTGMGLYITNEV
CEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHEECCCCEEEECCCCCEEEEEHHH
CKKLNHELEIQSNEGEGTKITIYFN
HHHCCCCEEEECCCCCCCEEEEEEC
>Mature Secondary Structure
MKIFIKNNKGVIILFLLNFMVLFSLYNLMGGFEDFNNFIYFMLLSIFNLLVYLILKYLNE
CEEEEECCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKMYKSLEKKPEVFEDCLNSFGDSTLGKHLNEYTGELYSIYKFHMHENIKKQTEHLNFIN
HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWVHQMKTPLSVIKLIIQENGEQQFIKDIKEETEKLEEGLNIALYNARLENFHNDFNVAE
HHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCHHH
FDLKELVLDRVNYNKKLFIKNGVFPKVEMNNIKIKSDRKWISFILDQIIINGVKYSKGKG
HHHHHHHHHHHCCCCEEEEECCCCCCEEECCEEEECCHHHHHHHHHHHHHCCCCCCCCCC
KLIEIKAGEQQKRSYIYIKDEGIGIPKKDINRVMEPFYTGENGRIFGESTGMGLYITNEV
CEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHEECCCCEEEECCCCCEEEEEHHH
CKKLNHELEIQSNEGEGTKITIYFN
HHHCCCCEEEECCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377; 8867804 [H]