| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is yoaA [C]
Identifier: 170755743
GI number: 170755743
Start: 631207
End: 633561
Strand: Direct
Name: yoaA [C]
Synonym: CLD_0237
Alternate gene names: 170755743
Gene position: 631207-633561 (Clockwise)
Preceding gene: 170754762
Following gene: 170756200
Centisome position: 15.95
GC content: 25.86
Gene sequence:
>2355_bases ATGGAATGCAAGGGTGAAGTGAATATATCCGTTAGAAATTTAGTGGAGTTTATATTAAGAAACGGAGATATTGATATTGG ATATTTGGGGGGAAGCAGAGCTCAAGAAGGGATAAAAGCACATAAGAAGTTGCAAAAAATTAGGATGGAAAGTGCTACCC CTTTACTCATGATTGAATATGAGAAAGAAGTTTTATTAAAATATGCTATAGAATATAAAGACTTTTTATTTAAAGTAGAG GGAAGAGCAGATGGAATTATTATAGAAAATGACTCTATTACTATAGAAGAGATTAAGACTACAACTAAAAACTTGGATGA AATTAAAGATAATTTACTACACTGGGCTCAGGCTAAGTGTTACGCCTTTATTTATTCAAAGGAGAAAAATCTTGAAAAAA TTAATGTTAAATTAACTTATTATAATATTAAAAATGAAAACATTAAAAGTATAGATAAAACTTTTGAAATACAGGAATTA GAAGAATTTTTTTATGATATTATACATAAATATTATGTTTGGATAGAGTTTAATTATAAATTTAAGCAGGAAAGAAATAG GGACATTAAATTATTAAAGTTTCCCTTTAAAGAATATAGAGAAGGCCAAAGAAAATTAGCTGTATCTGTTTATAAGACTA TAAGTGAAAATAAAAATATATTTATAGAAGCTCCTACAGGTATAGGGAAAACTATTTCTACAATATTCCCAAGTATTAAG GCTATAGGAGAAGGTAAAATAGATAAAATTTTTTATTTAACAGCTAAGAATACTACAAGAGATTTTGTTTTGAGCAATTT TAAAAATATGGTAAATAGGGGAATGGCTTTTAAAGTTATTACCTTAATTTCCAAGGAAAAGATTTGTCTTAAAGAGGAGT TTAAATGTTCATCGGAAAAGTGTGAGTTTGCTAAAGGCCATTTTGATAGAATAAATGAAGCTATATTAGATATTTTAAAT AATGAAAATATTATAGATGAAACCGTTATTAAAAAATATGCCTTAAAACATAAAGTTTGTCCCTTTGAATTTTCTTTAGA TATAAGTTTATGGTGTGATGGGATAATCTGTGATTATAATTATGTTTTTGATCCTAGGGTATATTTAAGAAGATTTTTTT CTGATGGGAAGGATGATTTTGTATTACTGATAGATGAAGCTCATAATTTATTAGATAGATCTAGAGAAATGTTTTCTTCA TCTATATCCAAAAATAATGTTTTAAGTTTAAGAAAATCTATTAAAGATAAAAGTAAAGCTTTATATAGAATTTTAGGAAA AATAAATAAAGAACTTTTAGATATAAAAAAAATATATGAAGTGGATAATTATTATATGGAAAAAGAAAAGCCAGAAAAGC TGCAAATATTATTAAATAATTTTACATCAGAGATTGAAGTGCTTATGATGAAAGGAAGCTTTCAAATAGATGATGAATTA CTTAATTTTTATTTTGAGGCTTTATATTTTCTAAAGATATGTGAATTATATGGAGATAATTATATAACCTATGGAGAAGA ATATAATAGTGATTTTACAATTAAACTTTTTGCTATAGATACTTCAGGTTTATTAAATGAAATTTTAAAAAAGTCAAAGG CAAACATATTTTTTTCAGGAACCTTTTCTCCTATAAAATATTTCAGAGAAGTTTTAGGAGGAGACGATGAAGATTATGTT TTAAAATTAAATTCTCCTTTTCCAATAGAAAACCATAGGATTTTAATAGGTTATAATGTTTCTACAAAATATAAAAATAG ATGCAAAAGCTATGAGAATATATGTGATTATATAAATATGGCCTGCAAAATAAAGAAAGGAAACTATATGGTTTTTTTCC CATCCTATAAATATATGAAAGAAGTTTTTTTATTATATAAAGAAAAATATCCAGAAGAGAATGTTATAGTTCAAAATTCT TCTATGAGTGATGAAGAGAGAGAAGAATTTATAGATAAATTTGAAAAAGAAACAGAAAATGTAATAGGTTTTTGTGTATT GGGTGGGATTTTTTCAGAAGGAATTGATTTAACAGGGGATAAAATAATAGGAGCTATAATAATAGGAGTAGGATTACCAC AAATATGTGTAGAAAGAAATCTAATAAAGAATTATTATGATGATAAGAAACAGTCTGGCTTTCAGTATTCATATATTTAC CCGGGAATGACTAAAGTTATGCAGGCTGCTGGTAGGATAATAAGAACAGAGACAGATAAAGGAATAATACTACTTATTGA TGAACGATTTAATAGTTATTCCTATAAAGAGTTATTCCCTAAACACTGGTATCCTAATATTAATGTGAAAAATGAGAAAG AATTAGAAGGAGCTTTAAAGGAATTTTGGAATTAA
Upstream 100 bases:
>100_bases TATTTAAAATAATAAAATGCAAATTTGTTATAAAAAATTAATTTATATAAACTTATGATATAATTTGTATTAATAAACTA TATTGAAAAGGTTGATTTAT
Downstream 100 bases:
>100_bases TATATTAAATGGATAAACCAATTAATTTTTATTAAACTTAAATATTTATATTAAAAATTAAAAGATAATTAGAATACTTT ATTTGTGCACTAATATATAA
Product: putative ATP-dependent helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 784; Mature: 784
Protein sequence:
>784_residues MECKGEVNISVRNLVEFILRNGDIDIGYLGGSRAQEGIKAHKKLQKIRMESATPLLMIEYEKEVLLKYAIEYKDFLFKVE GRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKCYAFIYSKEKNLEKINVKLTYYNIKNENIKSIDKTFEIQEL EEFFYDIIHKYYVWIEFNYKFKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSIK AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSSEKCEFAKGHFDRINEAILDILN NENIIDETVIKKYALKHKVCPFEFSLDISLWCDGIICDYNYVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSS SISKNNVLSLRKSIKDKSKALYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGSFQIDDEL LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSGTFSPIKYFREVLGGDDEDYV LKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINMACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNS SMSDEEREEFIDKFEKETENVIGFCVLGGIFSEGIDLTGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY PGMTKVMQAAGRIIRTETDKGIILLIDERFNSYSYKELFPKHWYPNINVKNEKELEGALKEFWN
Sequences:
>Translated_784_residues MECKGEVNISVRNLVEFILRNGDIDIGYLGGSRAQEGIKAHKKLQKIRMESATPLLMIEYEKEVLLKYAIEYKDFLFKVE GRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKCYAFIYSKEKNLEKINVKLTYYNIKNENIKSIDKTFEIQEL EEFFYDIIHKYYVWIEFNYKFKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSIK AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSSEKCEFAKGHFDRINEAILDILN NENIIDETVIKKYALKHKVCPFEFSLDISLWCDGIICDYNYVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSS SISKNNVLSLRKSIKDKSKALYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGSFQIDDEL LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSGTFSPIKYFREVLGGDDEDYV LKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINMACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNS SMSDEEREEFIDKFEKETENVIGFCVLGGIFSEGIDLTGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY PGMTKVMQAAGRIIRTETDKGIILLIDERFNSYSYKELFPKHWYPNINVKNEKELEGALKEFWN >Mature_784_residues MECKGEVNISVRNLVEFILRNGDIDIGYLGGSRAQEGIKAHKKLQKIRMESATPLLMIEYEKEVLLKYAIEYKDFLFKVE GRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKCYAFIYSKEKNLEKINVKLTYYNIKNENIKSIDKTFEIQEL EEFFYDIIHKYYVWIEFNYKFKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSIK AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSSEKCEFAKGHFDRINEAILDILN NENIIDETVIKKYALKHKVCPFEFSLDISLWCDGIICDYNYVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSS SISKNNVLSLRKSIKDKSKALYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGSFQIDDEL LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSGTFSPIKYFREVLGGDDEDYV LKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINMACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNS SMSDEEREEFIDKFEKETENVIGFCVLGGIFSEGIDLTGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY PGMTKVMQAAGRIIRTETDKGIILLIDERFNSYSYKELFPKHWYPNINVKNEKELEGALKEFWN
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI301897118, Length=265, Percent_Identity=24.1509433962264, Blast_Score=72, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 92049; Mature: 92049
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MECKGEVNISVRNLVEFILRNGDIDIGYLGGSRAQEGIKAHKKLQKIRMESATPLLMIEY CCCCCCCCEEHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC EKEVLLKYAIEYKDFLFKVEGRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKC HHHHHHHHHHHHHHEEEEECCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHE YAFIYSKEKNLEKINVKLTYYNIKNENIKSIDKTFEIQELEEFFYDIIHKYYVWIEFNYK EEEEEECCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE FKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSIK ECCCCCCCEEEEECCHHHHHCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSSEK HCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHCCCCCCC CEFAKGHFDRINEAILDILNNENIIDETVIKKYALKHKVCPFEFSLDISLWCDGIICDYN CHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECEEEECCC YVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSSSISKNNVLSLRKSIKDKSKA EEECHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGSFQIDDEL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHH LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSG HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEC TFSPIKYFREVLGGDDEDYVLKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINM CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC ACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNSSMSDEEREEFIDKFEKETEN EEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH VIGFCVLGGIFSEGIDLTGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHCCCEEEEEC PGMTKVMQAAGRIIRTETDKGIILLIDERFNSYSYKELFPKHWYPNINVKNEKELEGALK CCHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHH EFWN HHCC >Mature Secondary Structure MECKGEVNISVRNLVEFILRNGDIDIGYLGGSRAQEGIKAHKKLQKIRMESATPLLMIEY CCCCCCCCEEHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC EKEVLLKYAIEYKDFLFKVEGRADGIIIENDSITIEEIKTTTKNLDEIKDNLLHWAQAKC HHHHHHHHHHHHHHEEEEECCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHE YAFIYSKEKNLEKINVKLTYYNIKNENIKSIDKTFEIQELEEFFYDIIHKYYVWIEFNYK EEEEEECCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE FKQERNRDIKLLKFPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSIK ECCCCCCCEEEEECCHHHHHCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH AIGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVITLISKEKICLKEEFKCSSEK HCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHCCCCCCC CEFAKGHFDRINEAILDILNNENIIDETVIKKYALKHKVCPFEFSLDISLWCDGIICDYN CHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECEEEECCC YVFDPRVYLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSSSISKNNVLSLRKSIKDKSKA EEECHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LYRILGKINKELLDIKKIYEVDNYYMEKEKPEKLQILLNNFTSEIEVLMMKGSFQIDDEL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHH LNFYFEALYFLKICELYGDNYITYGEEYNSDFTIKLFAIDTSGLLNEILKKSKANIFFSG HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEC TFSPIKYFREVLGGDDEDYVLKLNSPFPIENHRILIGYNVSTKYKNRCKSYENICDYINM CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC ACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEENVIVQNSSMSDEEREEFIDKFEKETEN EEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH VIGFCVLGGIFSEGIDLTGDKIIGAIIIGVGLPQICVERNLIKNYYDDKKQSGFQYSYIY HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHCCCEEEEEC PGMTKVMQAAGRIIRTETDKGIILLIDERFNSYSYKELFPKHWYPNINVKNEKELEGALK CCHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHH EFWN HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11029001 [H]