| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is ygjQ [C]
Identifier: 170755560
GI number: 170755560
Start: 3141899
End: 3142492
Strand: Reverse
Name: ygjQ [C]
Synonym: CLD_1642
Alternate gene names: 170755560
Gene position: 3142492-3141899 (Counterclockwise)
Preceding gene: 170756210
Following gene: 170755236
Centisome position: 79.39
GC content: 25.25
Gene sequence:
>594_bases GTGACAAATTATAAATTTAAGAAAATATTTAAGAGTTTTATATTTTTTATGATTTTAGTAATTTTAATAATAATTATTTT AGCGTCTAAAATAATATACTTTGGATTTAAATCACAGCCACAAAAATCAGATTCTATAATAATATTAGGATGTAAAGTTA AAGGAAATGATCCAACACCCTTTTTAAAGCGGAGACTAGATGAAGGATTAAGGCTATATAATGAGGGATATGGAAAGTAT ATAATAGTTTCTGGTGCAAAAGGTCCTGGGGAAAATATAAGTGAAGCTGAAGCAATGCAAAAATATTTAGTTCAAAAGGG TTTGGATAAAAAATTTATAATACTAGAAGATAAATCAAGAAATACACTAGAGAATATAAAATTTTCTAAAAAGAAAATGG AAGATAATAATTTAAGCTCCTCTATAATAGTATCTAATAAATATCATCTAAAAAGATCAGAATTATTATGCCAAAAGGAA GGAATAAAAGCAAGTTATTCTGGAGTTTTTGTAAGATCTCATATGTCTCATGAAATAATGGGGTTTTTAAGAGAAATACC TGCATTACTGGTATATTATATTAAAACAATGTAA
Upstream 100 bases:
>100_bases ACTTATATCTAAAATTTTAATATATTTTATAAATTGATAAAAGTGAATAAAAATTTTAAAATTATCTATAAATAATTCTA CAAGGAATGAGATGAAATAA
Downstream 100 bases:
>100_bases TAAAGGAATTGTTTCAAAATAGATTTAATTTTAATAAGTGTATTTTTATATTTATGGTGTTAAAATTAAATCTATTTTAT TTGAGATATTATCTTTTAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MTNYKFKKIFKSFIFFMILVILIIIILASKIIYFGFKSQPQKSDSIIILGCKVKGNDPTPFLKRRLDEGLRLYNEGYGKY IIVSGAKGPGENISEAEAMQKYLVQKGLDKKFIILEDKSRNTLENIKFSKKKMEDNNLSSSIIVSNKYHLKRSELLCQKE GIKASYSGVFVRSHMSHEIMGFLREIPALLVYYIKTM
Sequences:
>Translated_197_residues MTNYKFKKIFKSFIFFMILVILIIIILASKIIYFGFKSQPQKSDSIIILGCKVKGNDPTPFLKRRLDEGLRLYNEGYGKY IIVSGAKGPGENISEAEAMQKYLVQKGLDKKFIILEDKSRNTLENIKFSKKKMEDNNLSSSIIVSNKYHLKRSELLCQKE GIKASYSGVFVRSHMSHEIMGFLREIPALLVYYIKTM >Mature_196_residues TNYKFKKIFKSFIFFMILVILIIIILASKIIYFGFKSQPQKSDSIIILGCKVKGNDPTPFLKRRLDEGLRLYNEGYGKYI IVSGAKGPGENISEAEAMQKYLVQKGLDKKFIILEDKSRNTLENIKFSKKKMEDNNLSSSIIVSNKYHLKRSELLCQKEG IKASYSGVFVRSHMSHEIMGFLREIPALLVYYIKTM
Specific function: Unknown
COG id: COG1434
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22683; Mature: 22552
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNYKFKKIFKSFIFFMILVILIIIILASKIIYFGFKSQPQKSDSIIILGCKVKGNDPTP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCH FLKRRLDEGLRLYNEGYGKYIIVSGAKGPGENISEAEAMQKYLVQKGLDKKFIILEDKSR HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC NTLENIKFSKKKMEDNNLSSSIIVSNKYHLKRSELLCQKEGIKASYSGVFVRSHMSHEIM CHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH GFLREIPALLVYYIKTM HHHHHHHHHHHHHHHCC >Mature Secondary Structure TNYKFKKIFKSFIFFMILVILIIIILASKIIYFGFKSQPQKSDSIIILGCKVKGNDPTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCH FLKRRLDEGLRLYNEGYGKYIIVSGAKGPGENISEAEAMQKYLVQKGLDKKFIILEDKSR HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC NTLENIKFSKKKMEDNNLSSSIIVSNKYHLKRSELLCQKEGIKASYSGVFVRSHMSHEIM CHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH GFLREIPALLVYYIKTM HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA