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The map label for this gene is yicO [C]

Identifier: 170756210

GI number: 170756210

Start: 3143073

End: 3144515

Strand: Reverse

Name: yicO [C]

Synonym: CLD_1641

Alternate gene names: 170756210

Gene position: 3144515-3143073 (Counterclockwise)

Preceding gene: 170755046

Following gene: 170755560

Centisome position: 79.44

GC content: 32.02

Gene sequence:

>1443_bases
ATGTATATGGAGAAGGAAAAAAACTATAAAGAACCTAATAATAAAGGTTTTTTGGACTCATTTTTTAAATTATCAGAGCG
TGGTAGTAATGTTAAGACTGAGATTATAGCAGGTATTACTACATTTATTACTATGGCATATATAATATTTGTTAATCCAA
GCATATTAATGCAAGCAGGAATGAATTCTAAAGGGCTTGTTGGTGAAGCAGCTGTAAAGGCAGGGCTATCTGCCATAAAT
GATCCAGTAGTTGGAGCAGTATTTGCAGCTACTTGTATTTCAGCAGGTATAGGTACTTTAATAATGGCTCTTTACGCTAA
TGTACCTTTCGCACAAGCACCAGGTATGGGGTTAAATGCCTTTTTTACTTTTAGTGTATGTTTAACTTTAGGATATACTT
GGCAACAAGCTTTAGCAGCAGTATTTATATCTGGATTGCTTTTTATAATTATAACATTAACATCTATAAGAGAAAAAATA
GTAGATGCCCTTCCACAAAATTTAAAATTAGCTATATCTGGTGGAATAGGATTATTTATAGCTTTAGTAGGATTTAAATC
TGGTGGAATAATAGTTGCAAATCCAGCAACACTTATAAGTTTTGGTGATTTTACAAATCCGGCAACTGTATTAACTATAA
TAGGTATTTGTATAACAGCTATTTTGATGGCTAAAAATGTTAAAGGTTCTATGTTAATAGGAATAGTTGTTACTACGTTA
ATAGGAATACCTTTAGGAGTAACAAAAGTAGCAGGAGTAAGTTTTATATCAGCACCACCATCTTTAGCACCAACTTTTTT
AAAATTAGATTTACCAGGACTTTTAGGTTTTGGAGGAGCAGGAATAGTTGGAGCTTTAATGAGCATATTGACAGTTGTTA
TATCTTTTAGCTTAGTAGACATGTTTGATACTATAGGAACTTTAGTTGGAACAGCAGAAAAAGCAGGAATGCTTGATGAA
AATGGAAAAATGGAAGATTTAGATAAAGCACTTTTAGCAGATGCAGTAGCTACTACAGCAGGAGCTTTAATTGGAACAAG
TACTGTTACTACTTATGTAGAATCTACAGCAGGGGTATCAGAAGGTGGAAGAACAGGTTTAACATCCTTTGTTACAGCTA
TTATGTTTTTATTAGCAATGTTTTTTAGTGGACTTGTAGGAATAGTTCCAGCAGAAGCTACAGCACCAGCACTTATAATA
GTAGGTGTATTAATGATGGGAGCTATAACAAAAATAGATTTTAATGATTTTACAGAAGCTCTACCATCTTTCTTTACTAT
ATCAATAATGCCATTTAGTTATAGTATTGCTAATGGTATAGCAGCAGGAATAATATTTTATCCAATAGTTAAAGTATTTA
CAGGTAAGAGAAAAGAAGTTCATCCAATAGTTTATATATTGGCAGTATTATTCATAATTAGATTTACAATTCTTCCTAAA
TAA

Upstream 100 bases:

>100_bases
TAAGTCCAGTTTATTTATTTGTATATTAAAGTTTTTGTTTTGGATTTACTCATATTTATAATCCGTAAGCAAAAACTTTT
TTATTTAGGAGGAATATTAC

Downstream 100 bases:

>100_bases
ATATAAATATAAATATAAATATAAATATAAATATAAATATAAATATAAATATAAATATAAATATAAATATAAATATAAAT
ATAAATATAAATATAAATAT

Product: xanthine/uracil permease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEIIAGITTFITMAYIIFVNPSILMQAGMNSKGLVGEAAVKAGLSAIN
DPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKI
VDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIGIVVTTL
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVDMFDTIGTLVGTAEKAGMLDE
NGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALII
VGVLMMGAITKIDFNDFTEALPSFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK

Sequences:

>Translated_480_residues
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEIIAGITTFITMAYIIFVNPSILMQAGMNSKGLVGEAAVKAGLSAIN
DPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKI
VDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIGIVVTTL
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVDMFDTIGTLVGTAEKAGMLDE
NGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALII
VGVLMMGAITKIDFNDFTEALPSFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK
>Mature_480_residues
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEIIAGITTFITMAYIIFVNPSILMQAGMNSKGLVGEAAVKAGLSAIN
DPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKI
VDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIGIVVTTL
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVDMFDTIGTLVGTAEKAGMLDE
NGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALII
VGVLMMGAITKIDFNDFTEALPSFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082309, Length=472, Percent_Identity=43.0084745762712, Blast_Score=374, Evalue=1e-105,
Organism=Escherichia coli, GI1790150, Length=470, Percent_Identity=42.5531914893617, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1790499, Length=463, Percent_Identity=33.0453563714903, Blast_Score=228, Evalue=9e-61,
Organism=Escherichia coli, GI48994909, Length=464, Percent_Identity=31.25, Blast_Score=211, Evalue=6e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 50106; Mature: 50106

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEIIAGITTFITMAYIIFVNPSILMQAG
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
MNSKGLVGEAAVKAGLSAINDPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNA
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKIVDALPQNLKLAISGGIGLFI
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
ALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIGIVVTTL
HHHHCCCCCEEEECCHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVD
HHCCCCHHHHHCCHHCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHH
MFDTIGTLVGTAEKAGMLDENGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVS
HHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALIIVGVLMMGAITKIDFNDFTEA
CCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LPSFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEIIAGITTFITMAYIIFVNPSILMQAG
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
MNSKGLVGEAAVKAGLSAINDPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNA
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKIVDALPQNLKLAISGGIGLFI
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
ALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIGIVVTTL
HHHHCCCCCEEEECCHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVD
HHCCCCHHHHHCCHHCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHH
MFDTIGTLVGTAEKAGMLDENGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVS
HHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALIIVGVLMMGAITKIDFNDFTEA
CCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LPSFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]