| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is yejF [C]
Identifier: 170755429
GI number: 170755429
Start: 1522377
End: 1523171
Strand: Direct
Name: yejF [C]
Synonym: CLD_3179
Alternate gene names: 170755429
Gene position: 1522377-1523171 (Clockwise)
Preceding gene: 170756391
Following gene: 170756723
Centisome position: 38.46
GC content: 26.29
Gene sequence:
>795_bases TTGAATATTTTAGAAGTCAAAGGCCTTAGGATTGAAGAAGAAAAAAATAAAAAAATTTTAGTTGGGAGTACTAATTTTGA AGTAGAAAAAGGAAAGATTACTTGTATAGTAGGGGAAAGTGGAAGTGGGAAAACTATTACAGCCATGTCCATAATAGGAA TGCTTCCACAAGGAGTTAGGGTTATAGAGGGAGAAATACTTTTTAACGGGGAAAATACTTTTAATTTCTCTAAAGAAAAA TTAAGAGACTTTAGAGGAAAGAAAATTTTTTCTATATTTCAAAATTCTATAAATTGTTTTAATCCCTCTGTAATTATGGA AACACAAATATACAATATGATATGTAGTCATTATAGTACAGATAAGGAAAATTTAAAAAATAAACTTATAAATATAATGA AAAATATTAATTTGAAAAATCCTGAAATTATATTAAAACAGTATCCTTTTCAATTAAGTGGAGGTATGCTTCAAAGGATG ATGATTGCATCAGCTATACTTATGGAACCAGATATAATAATAGCAGATGAACCAACTACTGCCTTGGATTTAACATCTCA AAAAGATATACTAAATCAATTGAAAATGATAAAAGAAAAATTGAATACTACTATATTAATGATAACTCATGATTTTGGAG TAGTAGCGGAAATTGCAGATAATGTGATAATTATGCAAAATGGAAATATTATAGAAAAGGGAAATGTATATAATATATTT GATAATCCTCAAGAAAATTATACTAAAACTTTAATAAATGCTACCTTTAAAAGAGAGGTAACTTATGTATGTTAG
Upstream 100 bases:
>100_bases AGGGAGAAATTTAATTTTATAAATATACAGTCATTAAACAAGTTTTACAGGTTAAAAGATTTTTGCAAATCATTCATTTA GCCTTTTAGGAGGAAATAGT
Downstream 100 bases:
>100_bases AAGCTAAAAATGTAGTAAAAAGCTATAATACTAAATTAAGATTATTTACAAAAAATAAATTAGATTTTAGAGCTATAGAT AATGTATCCTTTAAATTAAA
Product: peptide/opine/nickel uptake ABC transporter ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MNILEVKGLRIEEEKNKKILVGSTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVRVIEGEILFNGENTFNFSKEK LRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYSTDKENLKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRM MIASAILMEPDIIIADEPTTALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF DNPQENYTKTLINATFKREVTYVC
Sequences:
>Translated_264_residues MNILEVKGLRIEEEKNKKILVGSTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVRVIEGEILFNGENTFNFSKEK LRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYSTDKENLKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRM MIASAILMEPDIIIADEPTTALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF DNPQENYTKTLINATFKREVTYVC >Mature_264_residues MNILEVKGLRIEEEKNKKILVGSTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVRVIEGEILFNGENTFNFSKEK LRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYSTDKENLKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRM MIASAILMEPDIIIADEPTTALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF DNPQENYTKTLINATFKREVTYVC
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=247, Percent_Identity=29.9595141700405, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI9961250, Length=226, Percent_Identity=30.0884955752212, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI4505771, Length=226, Percent_Identity=30.0884955752212, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI9961252, Length=226, Percent_Identity=30.0884955752212, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI11967969, Length=232, Percent_Identity=24.5689655172414, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1788506, Length=244, Percent_Identity=37.2950819672131, Blast_Score=193, Evalue=8e-51, Organism=Escherichia coli, GI1789890, Length=240, Percent_Identity=40, Blast_Score=187, Evalue=4e-49, Organism=Escherichia coli, GI1789963, Length=256, Percent_Identity=35.9375, Blast_Score=184, Evalue=3e-48, Organism=Escherichia coli, GI1787759, Length=237, Percent_Identity=36.7088607594937, Blast_Score=183, Evalue=1e-47, Organism=Escherichia coli, GI145693107, Length=261, Percent_Identity=36.0153256704981, Blast_Score=180, Evalue=7e-47, Organism=Escherichia coli, GI48994883, Length=254, Percent_Identity=37.4015748031496, Blast_Score=172, Evalue=1e-44, Organism=Escherichia coli, GI1789962, Length=235, Percent_Identity=33.1914893617021, Blast_Score=145, Evalue=4e-36, Organism=Escherichia coli, GI1787500, Length=235, Percent_Identity=30.6382978723404, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1787548, Length=261, Percent_Identity=27.9693486590038, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1789032, Length=234, Percent_Identity=29.4871794871795, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1788225, Length=255, Percent_Identity=29.4117647058824, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=26.9230769230769, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787547, Length=243, Percent_Identity=27.9835390946502, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1786398, Length=239, Percent_Identity=30.1255230125523, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787758, Length=233, Percent_Identity=27.4678111587983, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1789891, Length=208, Percent_Identity=29.3269230769231, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1788761, Length=225, Percent_Identity=27.5555555555556, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1788450, Length=231, Percent_Identity=25.974025974026, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=28.4444444444444, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1786703, Length=235, Percent_Identity=29.3617021276596, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787370, Length=237, Percent_Identity=24.4725738396624, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1788644, Length=206, Percent_Identity=26.6990291262136, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1789672, Length=231, Percent_Identity=28.1385281385281, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081709, Length=238, Percent_Identity=23.5294117647059, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=28.8372093023256, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787143, Length=220, Percent_Identity=29.0909090909091, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789586, Length=227, Percent_Identity=29.5154185022026, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787105, Length=218, Percent_Identity=27.9816513761468, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787112, Length=237, Percent_Identity=27.4261603375527, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=24.2553191489362, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789873, Length=224, Percent_Identity=26.3392857142857, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87082267, Length=233, Percent_Identity=25.3218884120172, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1790162, Length=238, Percent_Identity=26.0504201680672, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=26.4840182648402, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI87081834, Length=223, Percent_Identity=26.0089686098655, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786319, Length=208, Percent_Identity=26.4423076923077, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1790467, Length=230, Percent_Identity=22.6086956521739, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787113, Length=222, Percent_Identity=27.4774774774775, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI87081791, Length=236, Percent_Identity=24.1525423728814, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1786803, Length=262, Percent_Identity=21.7557251908397, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1790544, Length=248, Percent_Identity=21.7741935483871, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1786653, Length=214, Percent_Identity=24.7663551401869, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786981, Length=234, Percent_Identity=26.0683760683761, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787792, Length=211, Percent_Identity=26.5402843601896, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI48994943, Length=227, Percent_Identity=22.9074889867841, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1790739, Length=242, Percent_Identity=23.1404958677686, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1786698, Length=202, Percent_Identity=25.7425742574257, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI212646699, Length=243, Percent_Identity=27.9835390946502, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI193211017, Length=227, Percent_Identity=27.7533039647577, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI193211015, Length=227, Percent_Identity=27.7533039647577, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI25146777, Length=227, Percent_Identity=30.3964757709251, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71996809, Length=227, Percent_Identity=28.1938325991189, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71996550, Length=229, Percent_Identity=30.1310043668122, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI193202349, Length=228, Percent_Identity=29.3859649122807, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI193208177, Length=243, Percent_Identity=26.3374485596708, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17541710, Length=214, Percent_Identity=30.8411214953271, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17567265, Length=238, Percent_Identity=28.1512605042017, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115534520, Length=214, Percent_Identity=28.0373831775701, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115535101, Length=238, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17567269, Length=231, Percent_Identity=28.1385281385281, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17558664, Length=228, Percent_Identity=27.6315789473684, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71992285, Length=237, Percent_Identity=28.2700421940928, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193209708, Length=226, Percent_Identity=28.7610619469027, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17511077, Length=230, Percent_Identity=27.3913043478261, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71984940, Length=224, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17510237, Length=244, Percent_Identity=23.7704918032787, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71992290, Length=236, Percent_Identity=27.9661016949153, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71983516, Length=207, Percent_Identity=23.1884057971014, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71983510, Length=207, Percent_Identity=23.1884057971014, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71983523, Length=207, Percent_Identity=23.1884057971014, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=227, Percent_Identity=27.7533039647577, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324985, Length=233, Percent_Identity=25.7510729613734, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323959, Length=236, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6323014, Length=245, Percent_Identity=24.0816326530612, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357907, Length=222, Percent_Identity=27.4774774774775, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI221500365, Length=219, Percent_Identity=23.2876712328767, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI116007184, Length=219, Percent_Identity=23.2876712328767, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI85725262, Length=198, Percent_Identity=29.7979797979798, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI85726357, Length=222, Percent_Identity=26.1261261261261, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24666092, Length=227, Percent_Identity=24.2290748898678, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281363262, Length=239, Percent_Identity=27.6150627615063, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24653245, Length=239, Percent_Identity=27.6150627615063, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 29915; Mature: 29915
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILEVKGLRIEEEKNKKILVGSTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVR CCCEEECCEEEECCCCCEEEEECCCCEEECCEEEEEEECCCCCCEEHHHHHHHHCCCCCE VIEGEILFNGENTFNFSKEKLRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYST EEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCC DKENLKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRMMIASAILMEPDIIIADEPTT CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC ALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF EEECCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHCCEEEEECCCEEECCCEEEEC DNPQENYTKTLINATFKREVTYVC CCCHHHHHHHHHHHHHHCEEEECC >Mature Secondary Structure MNILEVKGLRIEEEKNKKILVGSTNFEVEKGKITCIVGESGSGKTITAMSIIGMLPQGVR CCCEEECCEEEECCCCCEEEEECCCCEEECCEEEEEEECCCCCCEEHHHHHHHHCCCCCE VIEGEILFNGENTFNFSKEKLRDFRGKKIFSIFQNSINCFNPSVIMETQIYNMICSHYST EEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCC DKENLKNKLINIMKNINLKNPEIILKQYPFQLSGGMLQRMMIASAILMEPDIIIADEPTT CHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC ALDLTSQKDILNQLKMIKEKLNTTILMITHDFGVVAEIADNVIIMQNGNIIEKGNVYNIF EEECCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHCCEEEEECCCEEECCCEEEEC DNPQENYTKTLINATFKREVTYVC CCCHHHHHHHHHHHHHHCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]