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The map label for this gene is yndF [H]

Identifier: 170755389

GI number: 170755389

Start: 162305

End: 163483

Strand: Direct

Name: yndF [H]

Synonym: CLD_0661

Alternate gene names: 170755389

Gene position: 162305-163483 (Clockwise)

Preceding gene: 170754373

Following gene: 170756375

Centisome position: 4.1

GC content: 26.97

Gene sequence:

>1179_bases
ATGAAATCAAAAAAGTGCTTAGTTATAATGCTTATATTATTAACCATATGTATGACAGGATGCTGGGATAAGGTAGAAAT
AGATCAAAAAGCATTTACTTCTGTTCTAGGAGTGGATGCAGGAAAGGATATAGGAAAAGAAAAGCAGCTAAAGGAAATAA
GCGATTCAGCATCTTTTACGGGGAGTAAACTTGATAAAATAAAGGTAACCTATGCTTTCCCGGATATAAGTAAATTAGGA
CCTGAAAAGGGAGGAACGGCAGTAAATAAGACTATGTCAGTAGATGCATATTCAATGCAGGATAGTATAGATAAAGTTAT
AAATAAAAGCAGTAGAAATTTAAATTTTGGACACTTAAAGCTGATGGTTTTAAATACAAGTATTTTAGATTATAGTAATA
CTTTTAAAGAGGTAATAGATTATTTACAAAGACAACCATCTATAAATAGGATGATCTATATAGTATTTTCAGAAGATAAG
AGTGAAGAAATACTTAAATTTAAGCCTAGCATGGAAAAAAGTGTAGAAAATTATATAATAGGTATATTAGAAAATAATAA
AAAAAATAATACATCTTCTCCTCTTACATTAAATGAATTTTTAGAAGAGACTAGTGAAAATAATACAGCTTTGATACCTG
TTATTAATATAGATAAAAAAAGTAAAGATCTTAAAATATCAAAAGTTGCTGTAATAAAAGATGATAAAATAAAAGGATAT
ATAAGCACAGAACAGGCTAATAGTATCCAACTTATTAATAAAAAATTTAAAGGAGGAACTAGAACTATAATAAGAGATGG
AAGTCCTTTAGATTATTCCATAGAAAATAGTGACAGAAGAATTAAAATAAAGGATAAAAAAAAATTGAGCTTTGATATAA
AATTAAACTTGGAAGGCCAAATTAAAGGATATAATATTGATAAACAGATATCTTCTAAAGGAAATATAAAAGAAATAGAA
GACAATTTAGATAAAGCCGTAATACAGGATATAAAAGAAGTTATAAGAGTATCTCAAGCTGAATATAATACAGATATCTT
AGATCTAGGAGAGTTCATACATAAGTATCACCCTAAACTGTGGAAAGAAATAAAAGGTAATTGGAATGAATTATATAAAA
CTGTAGATATAAATGTTAGCGTGGATACAAAAGTTAGAAGAATAGGAGGAATAAAATAA

Upstream 100 bases:

>100_bases
ATAATTTTATTTTTAATAAGTAAGTTTAGATTAAGTAAGAGAAAGCAATAATATTAAAAGTAAGTATAAGCATAAATATA
TATTTGGGAGTTGTTATATT

Downstream 100 bases:

>100_bases
TTTCTTGAAGTGAATATAACTATAATATTTGGCAATAATAACTAATAAATAAGATCAATAGGGGGAATATATATGAAAAA
AATATTAGTTTTTATGTTAA

Product: Ger(x)C family germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MKSKKCLVIMLILLTICMTGCWDKVEIDQKAFTSVLGVDAGKDIGKEKQLKEISDSASFTGSKLDKIKVTYAFPDISKLG
PEKGGTAVNKTMSVDAYSMQDSIDKVINKSSRNLNFGHLKLMVLNTSILDYSNTFKEVIDYLQRQPSINRMIYIVFSEDK
SEEILKFKPSMEKSVENYIIGILENNKKNNTSSPLTLNEFLEETSENNTALIPVINIDKKSKDLKISKVAVIKDDKIKGY
ISTEQANSIQLINKKFKGGTRTIIRDGSPLDYSIENSDRRIKIKDKKKLSFDIKLNLEGQIKGYNIDKQISSKGNIKEIE
DNLDKAVIQDIKEVIRVSQAEYNTDILDLGEFIHKYHPKLWKEIKGNWNELYKTVDINVSVDTKVRRIGGIK

Sequences:

>Translated_392_residues
MKSKKCLVIMLILLTICMTGCWDKVEIDQKAFTSVLGVDAGKDIGKEKQLKEISDSASFTGSKLDKIKVTYAFPDISKLG
PEKGGTAVNKTMSVDAYSMQDSIDKVINKSSRNLNFGHLKLMVLNTSILDYSNTFKEVIDYLQRQPSINRMIYIVFSEDK
SEEILKFKPSMEKSVENYIIGILENNKKNNTSSPLTLNEFLEETSENNTALIPVINIDKKSKDLKISKVAVIKDDKIKGY
ISTEQANSIQLINKKFKGGTRTIIRDGSPLDYSIENSDRRIKIKDKKKLSFDIKLNLEGQIKGYNIDKQISSKGNIKEIE
DNLDKAVIQDIKEVIRVSQAEYNTDILDLGEFIHKYHPKLWKEIKGNWNELYKTVDINVSVDTKVRRIGGIK
>Mature_392_residues
MKSKKCLVIMLILLTICMTGCWDKVEIDQKAFTSVLGVDAGKDIGKEKQLKEISDSASFTGSKLDKIKVTYAFPDISKLG
PEKGGTAVNKTMSVDAYSMQDSIDKVINKSSRNLNFGHLKLMVLNTSILDYSNTFKEVIDYLQRQPSINRMIYIVFSEDK
SEEILKFKPSMEKSVENYIIGILENNKKNNTSSPLTLNEFLEETSENNTALIPVINIDKKSKDLKISKVAVIKDDKIKGY
ISTEQANSIQLINKKFKGGTRTIIRDGSPLDYSIENSDRRIKIKDKKKLSFDIKLNLEGQIKGYNIDKQISSKGNIKEIE
DNLDKAVIQDIKEVIRVSQAEYNTDILDLGEFIHKYHPKLWKEIKGNWNELYKTVDINVSVDTKVRRIGGIK

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 44466; Mature: 44466

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKKCLVIMLILLTICMTGCWDKVEIDQKAFTSVLGVDAGKDIGKEKQLKEISDSASFT
CCCCHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCC
GSKLDKIKVTYAFPDISKLGPEKGGTAVNKTMSVDAYSMQDSIDKVINKSSRNLNFGHLK
CCCCEEEEEEEECCCHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCEEE
LMVLNTSILDYSNTFKEVIDYLQRQPSINRMIYIVFSEDKSEEILKFKPSMEKSVENYII
EEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHEEECCCHHHHHHHEEE
GILENNKKNNTSSPLTLNEFLEETSENNTALIPVINIDKKSKDLKISKVAVIKDDKIKGY
EEEECCCCCCCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCEEEE
ISTEQANSIQLINKKFKGGTRTIIRDGSPLDYSIENSDRRIKIKDKKKLSFDIKLNLEGQ
EECCCCCCHHHHHHHCCCCCEEEEECCCCCEEEECCCCCEEEEECCCEEEEEEEEEEECE
IKGYNIDKQISSKGNIKEIEDNLDKAVIQDIKEVIRVSQAEYNTDILDLGEFIHKYHPKL
EECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHH
WKEIKGNWNELYKTVDINVSVDTKVRRIGGIK
HHHHCCCHHHEEEEEEEEEEECHHHHHCCCCC
>Mature Secondary Structure
MKSKKCLVIMLILLTICMTGCWDKVEIDQKAFTSVLGVDAGKDIGKEKQLKEISDSASFT
CCCCHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCC
GSKLDKIKVTYAFPDISKLGPEKGGTAVNKTMSVDAYSMQDSIDKVINKSSRNLNFGHLK
CCCCEEEEEEEECCCHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCEEE
LMVLNTSILDYSNTFKEVIDYLQRQPSINRMIYIVFSEDKSEEILKFKPSMEKSVENYII
EEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHEEECCCHHHHHHHEEE
GILENNKKNNTSSPLTLNEFLEETSENNTALIPVINIDKKSKDLKISKVAVIKDDKIKGY
EEEECCCCCCCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCEEEE
ISTEQANSIQLINKKFKGGTRTIIRDGSPLDYSIENSDRRIKIKDKKKLSFDIKLNLEGQ
EECCCCCCHHHHHHHCCCCCEEEEECCCCCEEEECCCCCEEEEECCCEEEEEEEEEEECE
IKGYNIDKQISSKGNIKEIEDNLDKAVIQDIKEVIRVSQAEYNTDILDLGEFIHKYHPKL
EECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHH
WKEIKGNWNELYKTVDINVSVDTKVRRIGGIK
HHHHCCCHHHEEEEEEEEEEECHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]