| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is trxA [C]
Identifier: 170755306
GI number: 170755306
Start: 1943069
End: 1943500
Strand: Reverse
Name: trxA [C]
Synonym: CLD_2820
Alternate gene names: 170755306
Gene position: 1943500-1943069 (Counterclockwise)
Preceding gene: 170754289
Following gene: 170756804
Centisome position: 49.1
GC content: 28.7
Gene sequence:
>432_bases ATGAAAAAAGGCGTTAAATTATTTATAATATTTATCTTAATTGTTATTATAGCAATTATGGCTTGGTTTAAAGCTGTTAA ACCTAAAGAAAAATATTCAAACATAGGAGGGAATTCAGTAAAAGAGGAAAATATTGATTATGAAGCTAATGTAGGTAAAA TGCCTGTATTATTAGAATTAAGTTCGCCAACCTGTGGACCTTGCAGAAAAATGACACCTATTATAAAGGAAGTAAAAGAG GAATACAAAGATACAGTGGATACTCACATAATAGATTTGACTAAAAATCCTGAATTTGGAGAAAAATATAAAGTTTCCGT GGTTCCAACACAAGTATTTTTGGACAAAGAGGGAAAGGTATTTTTTAGACATGAGGGTATGCTTACAAAAGAAGAAATTG TAGATATATTAAATAAAATGGGTGTAAAATAA
Upstream 100 bases:
>100_bases TAATTGTATGTTAAAATTGAAATAGCCTTCAGAGAAGTTATATTCTTTGAAGGTTATTTTGAAATTTTTACATTATATTA TAAAGCATAAAGGAGGAATT
Downstream 100 bases:
>100_bases TATGAATGAGATTATAACAAAAGCTGTAAGCCTAATGGGAAATAATGTTCTTTTAGCTTTGTTAATATCCTTCTTAGGAG GTATAATTTCTTCCTTTAGT
Product: thioredoxin family protein
Products: NA
Alternate protein names: Thioredoxin; Thioredoxin Domain-Containing Protein; Thioredoxin Family Protein; Thioredoxin-Related Protein; Thioredoxin Domain
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MKKGVKLFIIFILIVIIAIMAWFKAVKPKEKYSNIGGNSVKEENIDYEANVGKMPVLLELSSPTCGPCRKMTPIIKEVKE EYKDTVDTHIIDLTKNPEFGEKYKVSVVPTQVFLDKEGKVFFRHEGMLTKEEIVDILNKMGVK
Sequences:
>Translated_143_residues MKKGVKLFIIFILIVIIAIMAWFKAVKPKEKYSNIGGNSVKEENIDYEANVGKMPVLLELSSPTCGPCRKMTPIIKEVKE EYKDTVDTHIIDLTKNPEFGEKYKVSVVPTQVFLDKEGKVFFRHEGMLTKEEIVDILNKMGVK >Mature_143_residues MKKGVKLFIIFILIVIIAIMAWFKAVKPKEKYSNIGGNSVKEENIDYEANVGKMPVLLELSSPTCGPCRKMTPIIKEVKE EYKDTVDTHIIDLTKNPEFGEKYKVSVVPTQVFLDKEGKVFFRHEGMLTKEEIVDILNKMGVK
Specific function: Participates In Various Redox Reactions Through The Reversible Oxidation Of Its Active Center Dithiol To A Disulfide And Catalyzes Dithiol-Disulfide Exchange Reactions. [C]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16294; Mature: 16294
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKGVKLFIIFILIVIIAIMAWFKAVKPKEKYSNIGGNSVKEENIDYEANVGKMPVLLEL CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEE SSPTCGPCRKMTPIIKEVKEEYKDTVDTHIIDLTKNPEFGEKYKVSVVPTQVFLDKEGKV CCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEEECCEEEECCCCCE FFRHEGMLTKEEIVDILNKMGVK EEEECCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MKKGVKLFIIFILIVIIAIMAWFKAVKPKEKYSNIGGNSVKEENIDYEANVGKMPVLLEL CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEE SSPTCGPCRKMTPIIKEVKEEYKDTVDTHIIDLTKNPEFGEKYKVSVVPTQVFLDKEGKV CCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEEECCEEEECCCCCE FFRHEGMLTKEEIVDILNKMGVK EEEECCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA