| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is fliD [H]
Identifier: 170755113
GI number: 170755113
Start: 2903973
End: 2906435
Strand: Reverse
Name: fliD [H]
Synonym: CLD_1841
Alternate gene names: 170755113
Gene position: 2906435-2903973 (Counterclockwise)
Preceding gene: 170755818
Following gene: 170756507
Centisome position: 73.43
GC content: 29.96
Gene sequence:
>2463_bases ATGCCTATGAGATTACCTGGACTTGCTACAGGAATGGATACAGATGCTATGATAAAAACTATGATGAAACCATACACTAT GCGTGTAGATCAAATGAAACAAAAATCACAAATATTATTATGGCAGCAGGATGCCTATAGAAACGTAATGGATGGAGTAT CAAATATAACAAAAAAATATTTTGATGTATTAAATGGTGATAACTATATGTTATCTTCAAAGAATTTTTCTAGCTTAAAA CCATCAGGAATACCAGATACTTCAAATATCAAAATAAGTGCAGGAAGTGGAGCTATATCAGGAAATTATTCTTTAAAGGT TACAGAATTGGCAGCTAAGGCTGAAGCTATGGGAAATAATGCTGTGAATATAAAAACACTAAGTGAAGGAGATTATGGCA TAAAGATAGATGCTTCTAATAATAAAATAGTTATAGAGGGCAAGGAAATAACATTAAGTAAAAGCAGATATAATAATGTA TCAGATATAGCAGCTGAAATAAATAGCAAAATAAATGAAGATGGGTCTGGTTTAAAAGATACAGTTAAAGCAGTAGTTAA AAAAGATGGAAGTATAAAGATAGAAAATTTATTTAAAATAGATGATACAAACAAAGAATTAAAAATAACAGTAGATGGAA AAGAGTATACTGCAGAATTAGCCGCAGGAAATTTTACTTTAGAAGAATTGACAAATGCTATAAATAGTAAATTGGAAGTT GCTAAAGATGCTGATGGGAATGTGCTTCCAGAGGACAAGGGAGTTAAAGCATCTTTATCAGCAGATGGGAAAAACATAGA ATTTGCAGGAGCGACAGCACACCCTAATTATTCAGTGGCTGGAGTTAATTTGGGAGGAACAGTAGGGGGAAGTGGAATTA CAGGAACAGATGTAACAATAGCTGGTAATTCAATAACCTATGCAAAGGAAATAATAGCAGGATTTAATGATACATTTAAT GTACAAATAGGTACAGATGCTTCAAAAACAGTAAAATTAGCAGCAGGAACTATAAATTCATTAGCGGATTTGGAAACAAA ACTTAATGATGCCTTTGATGCTGCAGGACTAAAGTCTACTTTAACTGCAACAGTTAAAGATGAAAAAATAGTTTTATCAT CTAATTCAGATAAACAAGTAATAATTACAGGGGAAACAGGAAAAAGTGCTACTTCTTTATTAGGATTACCAGACAGATAT GAAATGAATACTAGTTTATCAGAAAAAATGTCCAATATAGTAGATGGAGAAGTTAAATTTACTATAAATGGTGTGGAGTT TAATTATGATTTTACAAAAGATTATGATTCAACTACAGCACCAAATGGAGCTAAAAATAAAACTATATCCCAAATATTGA GTGATATATCAGATAAAGCGAAAGTAGATATAAACTATAGTGAGATTAATAAAAAATTTACTATAAGATCTAAAGCTGAA GGTTCAAGTGAAAAAATAGTTGCTAGTGATAGTACAGGTGATTTTTTACAAAATCTATTTGGAGATAGCTCAATAAGTGT ACAAGGTAGAGATTCAGAATTTAATCTTACAACACCAAATGGAATTTCTACAATAACTAAACCAACAAATAATTTTACTA TAGATGGTGTAAATTATAATATAGAAGGAGCAAAGCAAGGGGAAGAAATAAGCTTTTCATTAAGTGGAGACACTGATAAT TCTTTTAATAAGATAAAAGGCTTTATAGATGATTACAATAAGTTAGTGGATGAATTACAGAATAAGCTTTCAGAAAAAAA GTATAGAAAATTTGAACCATTAACAGAAGAACAAAAGAAAGATATGAAGGAAAATGATATAAAACTTTGGGAAGAAAAGG CTCAGTCTGGTATATTAAGAAATGATTCTGATATACAAAATATGCTTTATAGCTTAAGAAGTGCTTTTTTTGATTCTGTA GAAGGAGCAGGGCTTTCTTTAAAAGAGATGGGATTAACCACATCTAGTGATTATACACAAGGTGGGAAAATAATATTTGA TCCTAATATAGATAAAGACGGAAACAGTGGAGAAGAAAGACTTAAAAAACTTCTTAAAGAAGATCCAGATAAAGTATTTA AAATATTTTCAAAACAATCTGATAGTTATCCAAGATATACTCCAGATTTAACTTCAACAGAGAGAAAACAAAGGTATAAT GAAGAAGGAATACTTCAAAGGATAAATGATATATTTAAAGACTATACAAGAACTACAAAAAATGTTAATGGTAAGATGGG AATATTTGTAGAAAAGGCAGGTATAAAAGGAACTGCATCTGAAATAAATAATACTCTTTATAAAGAATTAGAAAAGAAAG AAAAATCTATAAAAGAAATGGAAGATAGACTTGTAGAACGTGAAAATAGATATTATTATCAATTTGCACAATTGGAAAAA TATATGAGTCAAATGAATTCTCAATCTGCATGGCTTGCCCAACAATTAGGTGGGGGACAATAA
Upstream 100 bases:
>100_bases GGATGAAGTTATTCCATTAATAGAAGATATAAGAGATATATGGTATGAAGCTGAAAAATTATCAAAACAAACAAAATAAA AAACATGAGGGGGAATAATT
Downstream 100 bases:
>100_bases GGATAAAAATGAATGAGTTAAGGAATAAATTAATAAAATTTAGAGAAATAACATTAAATATAATAGATTCTTTAGAAAAG GAAGACTATGATACACCAGA
Product: flagellar hook-associated protein
Products: NA
Alternate protein names: HAP2; Filament cap protein [H]
Number of amino acids: Translated: 820; Mature: 819
Protein sequence:
>820_residues MPMRLPGLATGMDTDAMIKTMMKPYTMRVDQMKQKSQILLWQQDAYRNVMDGVSNITKKYFDVLNGDNYMLSSKNFSSLK PSGIPDTSNIKISAGSGAISGNYSLKVTELAAKAEAMGNNAVNIKTLSEGDYGIKIDASNNKIVIEGKEITLSKSRYNNV SDIAAEINSKINEDGSGLKDTVKAVVKKDGSIKIENLFKIDDTNKELKITVDGKEYTAELAAGNFTLEELTNAINSKLEV AKDADGNVLPEDKGVKASLSADGKNIEFAGATAHPNYSVAGVNLGGTVGGSGITGTDVTIAGNSITYAKEIIAGFNDTFN VQIGTDASKTVKLAAGTINSLADLETKLNDAFDAAGLKSTLTATVKDEKIVLSSNSDKQVIITGETGKSATSLLGLPDRY EMNTSLSEKMSNIVDGEVKFTINGVEFNYDFTKDYDSTTAPNGAKNKTISQILSDISDKAKVDINYSEINKKFTIRSKAE GSSEKIVASDSTGDFLQNLFGDSSISVQGRDSEFNLTTPNGISTITKPTNNFTIDGVNYNIEGAKQGEEISFSLSGDTDN SFNKIKGFIDDYNKLVDELQNKLSEKKYRKFEPLTEEQKKDMKENDIKLWEEKAQSGILRNDSDIQNMLYSLRSAFFDSV EGAGLSLKEMGLTTSSDYTQGGKIIFDPNIDKDGNSGEERLKKLLKEDPDKVFKIFSKQSDSYPRYTPDLTSTERKQRYN EEGILQRINDIFKDYTRTTKNVNGKMGIFVEKAGIKGTASEINNTLYKELEKKEKSIKEMEDRLVERENRYYYQFAQLEK YMSQMNSQSAWLAQQLGGGQ
Sequences:
>Translated_820_residues MPMRLPGLATGMDTDAMIKTMMKPYTMRVDQMKQKSQILLWQQDAYRNVMDGVSNITKKYFDVLNGDNYMLSSKNFSSLK PSGIPDTSNIKISAGSGAISGNYSLKVTELAAKAEAMGNNAVNIKTLSEGDYGIKIDASNNKIVIEGKEITLSKSRYNNV SDIAAEINSKINEDGSGLKDTVKAVVKKDGSIKIENLFKIDDTNKELKITVDGKEYTAELAAGNFTLEELTNAINSKLEV AKDADGNVLPEDKGVKASLSADGKNIEFAGATAHPNYSVAGVNLGGTVGGSGITGTDVTIAGNSITYAKEIIAGFNDTFN VQIGTDASKTVKLAAGTINSLADLETKLNDAFDAAGLKSTLTATVKDEKIVLSSNSDKQVIITGETGKSATSLLGLPDRY EMNTSLSEKMSNIVDGEVKFTINGVEFNYDFTKDYDSTTAPNGAKNKTISQILSDISDKAKVDINYSEINKKFTIRSKAE GSSEKIVASDSTGDFLQNLFGDSSISVQGRDSEFNLTTPNGISTITKPTNNFTIDGVNYNIEGAKQGEEISFSLSGDTDN SFNKIKGFIDDYNKLVDELQNKLSEKKYRKFEPLTEEQKKDMKENDIKLWEEKAQSGILRNDSDIQNMLYSLRSAFFDSV EGAGLSLKEMGLTTSSDYTQGGKIIFDPNIDKDGNSGEERLKKLLKEDPDKVFKIFSKQSDSYPRYTPDLTSTERKQRYN EEGILQRINDIFKDYTRTTKNVNGKMGIFVEKAGIKGTASEINNTLYKELEKKEKSIKEMEDRLVERENRYYYQFAQLEK YMSQMNSQSAWLAQQLGGGQ >Mature_819_residues PMRLPGLATGMDTDAMIKTMMKPYTMRVDQMKQKSQILLWQQDAYRNVMDGVSNITKKYFDVLNGDNYMLSSKNFSSLKP SGIPDTSNIKISAGSGAISGNYSLKVTELAAKAEAMGNNAVNIKTLSEGDYGIKIDASNNKIVIEGKEITLSKSRYNNVS DIAAEINSKINEDGSGLKDTVKAVVKKDGSIKIENLFKIDDTNKELKITVDGKEYTAELAAGNFTLEELTNAINSKLEVA KDADGNVLPEDKGVKASLSADGKNIEFAGATAHPNYSVAGVNLGGTVGGSGITGTDVTIAGNSITYAKEIIAGFNDTFNV QIGTDASKTVKLAAGTINSLADLETKLNDAFDAAGLKSTLTATVKDEKIVLSSNSDKQVIITGETGKSATSLLGLPDRYE MNTSLSEKMSNIVDGEVKFTINGVEFNYDFTKDYDSTTAPNGAKNKTISQILSDISDKAKVDINYSEINKKFTIRSKAEG SSEKIVASDSTGDFLQNLFGDSSISVQGRDSEFNLTTPNGISTITKPTNNFTIDGVNYNIEGAKQGEEISFSLSGDTDNS FNKIKGFIDDYNKLVDELQNKLSEKKYRKFEPLTEEQKKDMKENDIKLWEEKAQSGILRNDSDIQNMLYSLRSAFFDSVE GAGLSLKEMGLTTSSDYTQGGKIIFDPNIDKDGNSGEERLKKLLKEDPDKVFKIFSKQSDSYPRYTPDLTSTERKQRYNE EGILQRINDIFKDYTRTTKNVNGKMGIFVEKAGIKGTASEINNTLYKELEKKEKSIKEMEDRLVERENRYYYQFAQLEKY MSQMNSQSAWLAQQLGGGQ
Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the
COG id: COG1345
COG function: function code N; Flagellar capping protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliD family [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010810 - InterPro: IPR010809 - InterPro: IPR003481 [H]
Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]
EC number: NA
Molecular weight: Translated: 90077; Mature: 89946
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMRLPGLATGMDTDAMIKTMMKPYTMRVDQMKQKSQILLWQQDAYRNVMDGVSNITKKY CCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHH FDVLNGDNYMLSSKNFSSLKPSGIPDTSNIKISAGSGAISGNYSLKVTELAAKAEAMGNN HHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCEECCCCEEEEHHHHHHHHHCCCC AVNIKTLSEGDYGIKIDASNNKIVIEGKEITLSKSRYNNVSDIAAEINSKINEDGSGLKD CEEEEEECCCCCEEEEECCCCEEEEECCEEEEEHHHCCCHHHHHHHHHHHCCCCCCCHHH TVKAVVKKDGSIKIENLFKIDDTNKELKITVDGKEYTAELAAGNFTLEELTNAINSKLEV HHHHHHHCCCCEEEEEEEEECCCCCEEEEEECCHHHEEEHHCCCCCHHHHHHHHHCCEEE AKDADGNVLPEDKGVKASLSADGKNIEFAGATAHPNYSVAGVNLGGTVGGSGITGTDVTI ECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEE AGNSITYAKEIIAGFNDTFNVQIGTDASKTVKLAAGTINSLADLETKLNDAFDAAGLKST ECCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHH LTATVKDEKIVLSSNSDKQVIITGETGKSATSLLGLPDRYEMNTSLSEKMSNIVDGEVKF EEEEECCCEEEEECCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEE TINGVEFNYDFTKDYDSTTAPNGAKNKTISQILSDISDKAKVDINYSEINKKFTIRSKAE EEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCEEEEEECCC GSSEKIVASDSTGDFLQNLFGDSSISVQGRDSEFNLTTPNGISTITKPTNNFTIDGVNYN CCCCEEEECCCCHHHHHHHHCCCEEEEECCCCEEEEECCCCCCEEECCCCCEEECCEEEE IEGAKQGEEISFSLSGDTDNSFNKIKGFIDDYNKLVDELQNKLSEKKYRKFEPLTEEQKK ECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH DMKENDIKLWEEKAQSGILRNDSDIQNMLYSLRSAFFDSVEGAGLSLKEMGLTTSSDYTQ CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCC GGKIIFDPNIDKDGNSGEERLKKLLKEDPDKVFKIFSKQSDSYPRYTPDLTSTERKQRYN CCEEEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC EEGILQRINDIFKDYTRTTKNVNGKMGIFVEKAGIKGTASEINNTLYKELEKKEKSIKEM HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH EDRLVERENRYYYQFAQLEKYMSQMNSQSAWLAQQLGGGQ HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC >Mature Secondary Structure PMRLPGLATGMDTDAMIKTMMKPYTMRVDQMKQKSQILLWQQDAYRNVMDGVSNITKKY CCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHH FDVLNGDNYMLSSKNFSSLKPSGIPDTSNIKISAGSGAISGNYSLKVTELAAKAEAMGNN HHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCEECCCCEEEEHHHHHHHHHCCCC AVNIKTLSEGDYGIKIDASNNKIVIEGKEITLSKSRYNNVSDIAAEINSKINEDGSGLKD CEEEEEECCCCCEEEEECCCCEEEEECCEEEEEHHHCCCHHHHHHHHHHHCCCCCCCHHH TVKAVVKKDGSIKIENLFKIDDTNKELKITVDGKEYTAELAAGNFTLEELTNAINSKLEV HHHHHHHCCCCEEEEEEEEECCCCCEEEEEECCHHHEEEHHCCCCCHHHHHHHHHCCEEE AKDADGNVLPEDKGVKASLSADGKNIEFAGATAHPNYSVAGVNLGGTVGGSGITGTDVTI ECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEE AGNSITYAKEIIAGFNDTFNVQIGTDASKTVKLAAGTINSLADLETKLNDAFDAAGLKST ECCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHH LTATVKDEKIVLSSNSDKQVIITGETGKSATSLLGLPDRYEMNTSLSEKMSNIVDGEVKF EEEEECCCEEEEECCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEE TINGVEFNYDFTKDYDSTTAPNGAKNKTISQILSDISDKAKVDINYSEINKKFTIRSKAE EEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCCEEEEEECCC GSSEKIVASDSTGDFLQNLFGDSSISVQGRDSEFNLTTPNGISTITKPTNNFTIDGVNYN CCCCEEEECCCCHHHHHHHHCCCEEEEECCCCEEEEECCCCCCEEECCCCCEEECCEEEE IEGAKQGEEISFSLSGDTDNSFNKIKGFIDDYNKLVDELQNKLSEKKYRKFEPLTEEQKK ECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH DMKENDIKLWEEKAQSGILRNDSDIQNMLYSLRSAFFDSVEGAGLSLKEMGLTTSSDYTQ CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCC GGKIIFDPNIDKDGNSGEERLKKLLKEDPDKVFKIFSKQSDSYPRYTPDLTSTERKQRYN CCEEEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC EEGILQRINDIFKDYTRTTKNVNGKMGIFVEKAGIKGTASEINNTLYKELEKKEKSIKEM HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH EDRLVERENRYYYQFAQLEKYMSQMNSQSAWLAQQLGGGQ HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8195064; 9384377 [H]