| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755025
Identifier: 170755025
GI number: 170755025
Start: 837607
End: 838083
Strand: Direct
Name: 170755025
Synonym: CLD_0047
Alternate gene names: NA
Gene position: 837607-838083 (Clockwise)
Preceding gene: 170756665
Following gene: 170756420
Centisome position: 21.16
GC content: 26.62
Gene sequence:
>477_bases TTGGGCGGTAAACCTTCAAAAGATAAAATAAGAGCTGAATTTAATAATACAATTAAAAAAGATACACAATATGTATGGTT AAAGGAAGTGTCTGCTCAAGTTACACAACATGCTTTTGAAGATTTAAATAAGGATTTATCTATTGGAGTCGATTTAGGGG TAGAAAAATTAGCTGTTATAAATTGTTTAGATAAACCTATAAAAAACATTAATAAATCTGTAAAAGTTAGAAAACTAAAA AAGAAATTAAAAAGATTACAAAGAGGATTATCAAGAAAATATGAAGCAAATAAAAAGGGTAATGAATTTGTTTCGGCAGA TAGATTCTATCCTTCAAGTAAAATCTGCAGCAGTTGCAGCAGTAAAAAAGAAGAATTAAAGCTTAAAGATAGAATTTATG TATGTGATGAATGTGGCTTAGAAATAGATAGAGATAAAAATGCTTCAATTAATCTTGGTAATTATAAAATAGCATAA
Upstream 100 bases:
>100_bases TGAAAGTATGAGAAGTTCATAAGTTTTACAAGACTTTGAGAACTGCTTAGTAGTAGCGATGCTAAGTGAATAAGGCATAA AACTTGGAGAAATTTATAAG
Downstream 100 bases:
>100_bases TTGGTGATTTGAAAAAATTATGTTATATGTACCCTGCGTTGTGGGGGAATTTAAGTCCTTGGAGAATTGCACCAAACTAG AGTAGAATAAGAACTTATTT
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MGGKPSKDKIRAEFNNTIKKDTQYVWLKEVSAQVTQHAFEDLNKDLSIGVDLGVEKLAVINCLDKPIKNINKSVKVRKLK KKLKRLQRGLSRKYEANKKGNEFVSADRFYPSSKICSSCSSKKEELKLKDRIYVCDECGLEIDRDKNASINLGNYKIA
Sequences:
>Translated_158_residues MGGKPSKDKIRAEFNNTIKKDTQYVWLKEVSAQVTQHAFEDLNKDLSIGVDLGVEKLAVINCLDKPIKNINKSVKVRKLK KKLKRLQRGLSRKYEANKKGNEFVSADRFYPSSKICSSCSSKKEELKLKDRIYVCDECGLEIDRDKNASINLGNYKIA >Mature_157_residues GGKPSKDKIRAEFNNTIKKDTQYVWLKEVSAQVTQHAFEDLNKDLSIGVDLGVEKLAVINCLDKPIKNINKSVKVRKLKK KLKRLQRGLSRKYEANKKGNEFVSADRFYPSSKICSSCSSKKEELKLKDRIYVCDECGLEIDRDKNASINLGNYKIA
Specific function: Unknown
COG id: COG0675
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18000; Mature: 17869
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGKPSKDKIRAEFNNTIKKDTQYVWLKEVSAQVTQHAFEDLNKDLSIGVDLGVEKLAVI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH NCLDKPIKNINKSVKVRKLKKKLKRLQRGLSRKYEANKKGNEFVSADRFYPSSKICSSCS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHC SKKEELKLKDRIYVCDECGLEIDRDKNASINLGNYKIA CHHHHHHHHHHEEEECCCCCEECCCCCCEEECCCEECC >Mature Secondary Structure GGKPSKDKIRAEFNNTIKKDTQYVWLKEVSAQVTQHAFEDLNKDLSIGVDLGVEKLAVI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH NCLDKPIKNINKSVKVRKLKKKLKRLQRGLSRKYEANKKGNEFVSADRFYPSSKICSSCS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHC SKKEELKLKDRIYVCDECGLEIDRDKNASINLGNYKIA CHHHHHHHHHHEEEECCCCCEECCCCCCEEECCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA