| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is bdhB [H]
Identifier: 170756420
GI number: 170756420
Start: 838313
End: 838738
Strand: Direct
Name: bdhB [H]
Synonym: CLD_0046
Alternate gene names: 170756420
Gene position: 838313-838738 (Clockwise)
Preceding gene: 170755025
Following gene: 170757195
Centisome position: 21.18
GC content: 40.61
Gene sequence:
>426_bases TTGAGAAAAGTGGTAAGAAAAGCAATTCATGTGGGCACTATATTGACTATTGCTGCAGCAGGAAGTGAGGGATCAGGCGA TTCTGTTATAACTCATGAAGATGGCATGTTAAAACGTGGTGCCAGCGGAGATGCTCTAAGACCTGTATTCTCCATATTAA CCCCACGATTGACTACTACTCTATCTAACTGTCAAACAGCTTGTGGTGCTACAGACATTATGGCTCACGTATTTGAAAGA TATTTTACAAACACTAAGGATGTTGAAATAACAGATAGGCTTTGTGAAGGGGTACTGCTCACCATGATTAAAGAAGTGCC AAGGGTTTTAGAAAATCCTAATGACTACAATGCTAGAGCAAATATAATGTGGGCGGGAATGGTTGCTCATAATGATATTT GTGGAGTAGGACGTGTGCAGGATTGA
Upstream 100 bases:
>100_bases ATTTAGCAATGAATAGCACAAGTAAAATTTATATATTTATAAGTTTTATGCAACGGCTCTGTTGTTAGAAGTGGTTTGCT TGAAAGAGTTGAAAAATCTC
Downstream 100 bases:
>100_bases AGCAGTCACCAAATAGAGTATGAAAGGTAGCTTCCCTAACTCAATTAAGAAATACTTATAACCGTATCATTAGGACGTGA ACATCTTGAGGTGTTCTTGT
Product: dehydrogenase domain-containing protein
Products: NA
Alternate protein names: BDH II [H]
Number of amino acids: Translated: 141; Mature: 141
Protein sequence:
>141_residues MRKVVRKAIHVGTILTIAAAGSEGSGDSVITHEDGMLKRGASGDALRPVFSILTPRLTTTLSNCQTACGATDIMAHVFER YFTNTKDVEITDRLCEGVLLTMIKEVPRVLENPNDYNARANIMWAGMVAHNDICGVGRVQD
Sequences:
>Translated_141_residues MRKVVRKAIHVGTILTIAAAGSEGSGDSVITHEDGMLKRGASGDALRPVFSILTPRLTTTLSNCQTACGATDIMAHVFER YFTNTKDVEITDRLCEGVLLTMIKEVPRVLENPNDYNARANIMWAGMVAHNDICGVGRVQD >Mature_141_residues MRKVVRKAIHVGTILTIAAAGSEGSGDSVITHEDGMLKRGASGDALRPVFSILTPRLTTTLSNCQTACGATDIMAHVFER YFTNTKDVEITDRLCEGVLLTMIKEVPRVLENPNDYNARANIMWAGMVAHNDICGVGRVQD
Specific function: Unknown
COG id: COG1979
COG function: function code C; Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1789386, Length=139, Percent_Identity=39.568345323741, Blast_Score=112, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001670 - InterPro: IPR018211 [H]
Pfam domain/function: PF00465 Fe-ADH [H]
EC number: 1.1.-.- [C]
Molecular weight: Translated: 15304; Mature: 15304
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKVVRKAIHVGTILTIAAAGSEGSGDSVITHEDGMLKRGASGDALRPVFSILTPRLTTT CHHHHHHHHHHHHHHHEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH LSNCQTACGATDIMAHVFERYFTNTKDVEITDRLCEGVLLTMIKEVPRVLENPNDYNARA HHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE NIMWAGMVAHNDICGVGRVQD EEEEEEEHHCCCCCCCCCCCC >Mature Secondary Structure MRKVVRKAIHVGTILTIAAAGSEGSGDSVITHEDGMLKRGASGDALRPVFSILTPRLTTT CHHHHHHHHHHHHHHHEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH LSNCQTACGATDIMAHVFERYFTNTKDVEITDRLCEGVLLTMIKEVPRVLENPNDYNARA HHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE NIMWAGMVAHNDICGVGRVQD EEEEEEEHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1385386; 11466286; 1809209 [H]