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The map label for this gene is tnpA1 [H]

Identifier: 170755021

GI number: 170755021

Start: 2034445

End: 2035575

Strand: Reverse

Name: tnpA1 [H]

Synonym: CLD_2720

Alternate gene names: 170755021

Gene position: 2035575-2034445 (Counterclockwise)

Preceding gene: 170757657

Following gene: 170756078

Centisome position: 51.43

GC content: 28.38

Gene sequence:

>1131_bases
ATGGAAGTAGTAAAGGTAAAAACAGAGGAAGGGAAAGAGAGATATTTTGTTGCAGATGATTTAGGTTTACCAATAGAACC
AATATTAAAGTTTATAAGGTTTAAAGATAATACTAATTATGCAAGAAATACTTTAAGAATGTATTGCCAACACTTAAAAC
TGTATTTTGAATACTTGCAACAAAGAGAATTAGACTTTCAAGATATAACAATAGATGATTTGGCATTGTTCGTAAATTGG
TTACAGAACCCTTATGAGAGCTTAAAGGTTATACCAGGCACTCATATAGAATCAGCAAGAAGTCCAAGAACTATAAATAT
TATAGTAAATACTGTATTAACATTTTATGACTATATTTTAAGACATGAGAAATATAGCAATAATATATCGGACAGGCTTA
AAAGATTTGTATCTATTCCAAGTAGAAACTTTAAAGGTTTTTTATATGGAATAGCTTACGAACACAAGAAAGTTGCAAGC
AATATATTAAAACTAAAAGTTCATAAATCAAAACCTAAGACTTTAAATAAAGAGGAAATAGAAATGCTCGTAAGAGCTTG
TAATAATCTAAGAGATAAATTTTTATTATCTTTGCTTTATGAAACAGGAATGAGAATAGGCGAAGCTTTATCTTTATGGA
TTGAAGATTTTGATATAAGCGATATGATAATTGATCTAAAAGATCGAGGCCAACTTGAAAATAATGCAGAAATTAAAACT
GTATCAAGTCCGAGAAGAATAGATATATCTCAAAATCTTGCAGATATGTTTATGGAGTATATAGCTAAATATCACACGGA
AGAAGTTGAAACTAATCATATATTTATTAAGATTAGCGGAGATAATAAATATAAGGCTATGACTTATATAGATGTCGATA
ATTTATTTAGAACATTAAAGAAAAAAACAAAAATATATGTTACACCACATATGTTTAGACATAGTTCATTAACAGTTCTT
AGAATGGCTGGATGGCAACCTGAACTTCTAAGAATAAGAGCTGGCCATAAAAATATCTATACTACTATGAATACCTATAT
CCATCCTTCTGATGAAGAAATAGCAAAAGAGTTTGAAAAGACTCGGCCAAATTTGGATTTAGATATTTATAGTAAAGGAG
AAAACAATTAA

Upstream 100 bases:

>100_bases
GATATAACTTAGATTATTTAATATATAGTTTGAAATATTATAGTAGTTATAGTAAACTATAAATGAAATATAATCCAATT
ATGGGAGTGTATATATAATT

Downstream 100 bases:

>100_bases
TGAACAATAAATTACAGAATATACGAAATGGCCAACTAAATAAATATGATGAAATAATTAAATATTTAAAACAAGATAAT
GGATATTGGTTAAATAATGA

Product: site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MEVVKVKTEEGKERYFVADDLGLPIEPILKFIRFKDNTNYARNTLRMYCQHLKLYFEYLQQRELDFQDITIDDLALFVNW
LQNPYESLKVIPGTHIESARSPRTINIIVNTVLTFYDYILRHEKYSNNISDRLKRFVSIPSRNFKGFLYGIAYEHKKVAS
NILKLKVHKSKPKTLNKEEIEMLVRACNNLRDKFLLSLLYETGMRIGEALSLWIEDFDISDMIIDLKDRGQLENNAEIKT
VSSPRRIDISQNLADMFMEYIAKYHTEEVETNHIFIKISGDNKYKAMTYIDVDNLFRTLKKKTKIYVTPHMFRHSSLTVL
RMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEEIAKEFEKTRPNLDLDIYSKGENN

Sequences:

>Translated_376_residues
MEVVKVKTEEGKERYFVADDLGLPIEPILKFIRFKDNTNYARNTLRMYCQHLKLYFEYLQQRELDFQDITIDDLALFVNW
LQNPYESLKVIPGTHIESARSPRTINIIVNTVLTFYDYILRHEKYSNNISDRLKRFVSIPSRNFKGFLYGIAYEHKKVAS
NILKLKVHKSKPKTLNKEEIEMLVRACNNLRDKFLLSLLYETGMRIGEALSLWIEDFDISDMIIDLKDRGQLENNAEIKT
VSSPRRIDISQNLADMFMEYIAKYHTEEVETNHIFIKISGDNKYKAMTYIDVDNLFRTLKKKTKIYVTPHMFRHSSLTVL
RMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEEIAKEFEKTRPNLDLDIYSKGENN
>Mature_376_residues
MEVVKVKTEEGKERYFVADDLGLPIEPILKFIRFKDNTNYARNTLRMYCQHLKLYFEYLQQRELDFQDITIDDLALFVNW
LQNPYESLKVIPGTHIESARSPRTINIIVNTVLTFYDYILRHEKYSNNISDRLKRFVSIPSRNFKGFLYGIAYEHKKVAS
NILKLKVHKSKPKTLNKEEIEMLVRACNNLRDKFLLSLLYETGMRIGEALSLWIEDFDISDMIIDLKDRGQLENNAEIKT
VSSPRRIDISQNLADMFMEYIAKYHTEEVETNHIFIKISGDNKYKAMTYIDVDNLFRTLKKKTKIYVTPHMFRHSSLTVL
RMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEEIAKEFEKTRPNLDLDIYSKGENN

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44420; Mature: 44420

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVVKVKTEEGKERYFVADDLGLPIEPILKFIRFKDNTNYARNTLRMYCQHLKLYFEYLQ
CCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QRELDFQDITIDDLALFVNWLQNPYESLKVIPGTHIESARSPRTINIIVNTVLTFYDYIL
HHCCCCCCCCHHHHHHHHHHHHCHHHHCEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHH
RHEKYSNNISDRLKRFVSIPSRNFKGFLYGIAYEHKKVASNILKLKVHKSKPKTLNKEEI
HHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHEEEEEECCCCCCCCHHHH
EMLVRACNNLRDKFLLSLLYETGMRIGEALSLWIEDFDISDMIIDLKDRGQLENNAEIKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEE
VSSPRRIDISQNLADMFMEYIAKYHTEEVETNHIFIKISGDNKYKAMTYIDVDNLFRTLK
CCCCCEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEEHHHHHHHHH
KKTKIYVTPHMFRHSSLTVLRMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEEIAKEFEK
HCCEEEECHHHHCCCCEEEEEECCCCCCEEEEECCCCEEEEEEECEECCCHHHHHHHHHH
TRPNLDLDIYSKGENN
HCCCCCEEEECCCCCC
>Mature Secondary Structure
MEVVKVKTEEGKERYFVADDLGLPIEPILKFIRFKDNTNYARNTLRMYCQHLKLYFEYLQ
CCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
QRELDFQDITIDDLALFVNWLQNPYESLKVIPGTHIESARSPRTINIIVNTVLTFYDYIL
HHCCCCCCCCHHHHHHHHHHHHCHHHHCEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHH
RHEKYSNNISDRLKRFVSIPSRNFKGFLYGIAYEHKKVASNILKLKVHKSKPKTLNKEEI
HHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHEEEEEECCCCCCCCHHHH
EMLVRACNNLRDKFLLSLLYETGMRIGEALSLWIEDFDISDMIIDLKDRGQLENNAEIKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEE
VSSPRRIDISQNLADMFMEYIAKYHTEEVETNHIFIKISGDNKYKAMTYIDVDNLFRTLK
CCCCCEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEEHHHHHHHHH
KKTKIYVTPHMFRHSSLTVLRMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEEIAKEFEK
HCCEEEECHHHHCCCCEEEEEECCCCCCEEEEECCCCEEEEEEECEECCCHHHHHHHHHH
TRPNLDLDIYSKGENN
HCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]